Ccan009850.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637473.1:27814298-27822772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.052 4 9.2 1.4 3 23 25 45 24 45 0.96 2 13 4.6e-05 0.0035 18.8 4.1 1 23 83 106 83 106 0.96 3 13 0.026 2 10.2 3.2 1 23 108 130 108 130 0.97 4 13 0.43 33 6.3 0.0 1 23 164 186 164 186 0.94 5 13 4 3.1e+02 3.3 4.0 1 19 249 267 249 271 0.86 6 13 0.0016 0.13 13.9 0.7 1 23 277 300 277 300 0.92 7 13 0.0056 0.43 12.3 1.3 3 23 336 357 334 357 0.96 8 13 0.00031 0.024 16.2 0.1 3 23 364 386 362 386 0.94 9 13 0.058 4.5 9.0 0.1 3 23 394 414 394 414 0.97 10 13 2 1.6e+02 4.2 0.1 1 20 419 438 419 441 0.91 11 13 0.33 26 6.7 1.8 1 23 447 469 447 469 0.96 12 13 0.00015 0.011 17.2 1.8 1 23 475 497 475 497 0.98 13 13 0.0015 0.12 14.0 0.9 1 23 503 526 503 526 0.97
Sequence Information
- Coding Sequence
- ATGGCCATGGCGTTCGTGAGCGGCCAGCAGGCCCTCAAGCTTACCACGATCGACCTGGTCGGAGGCATCCTCTGCAGCATCTGCCGcttaacttttaaaaataagaagGAATATGACTTGCACTATTCCCAACATAACCTTGGCAAAGATGAGATTGTCTACACTTGTGTGATTTGTCTGAAAGATATCGCAGGGTACCCAAGCTTCCGCGGACACTGCTACACCATACATGTTATCAAGGATAGATTCAAGTGTGAGCATTGCCACAAGTTGTTCTCCAAGTCTTCATCCCTGAAGGACCACATCGCATCTGTACACAAATTCCAATGCTCTTGCTGCAAAAGAGAATTCCCAACCAAGAAAGAGCTGCAGCTTCACAAAATCATCCACATGAATGACAAACCCCCGTACAACTGCCAGACATGCAACGAGAATGTTGACTGCATAGACGCGTGCGAGCTGCACATCGACCTTCACTCCGTCTCCCTCTACTCCTGCCCTATCTGCAGCGAAAAGATAGACGACAAAGTACAAGCCGTAGACCATCTCACCATCCATTTTGGCAATGTACTTAACAATTCGAACGACACTGACGATTCAGATTCTGAATACAATGATAAACCTGAAGATAGTTCCATCGACCTCCTTGGCGGCATACTCTGCAAAGTTTGTTTTACGATCCACAAGAACCGAGCGGAGTTGGATCTCCACTTCAGCCAGGAACACCTGGGGATGAGCGTGTCGTATGTCTGTAACATTTGCAGGAAGGATTTTCAGAAGTACACACAGTTTGGCCAGCACTGCTATGAGCATATCACTAAGAACAGATTCAAATGCGAGTCGTGCGAGAAATCGTTCAGCCGGCTGGCTCGTCTCGTGACGCACACGGAGGCGTTCCACGCGCGGCCGGAGGGTGGCGGCGGCGAGGGTGGCGGCGGCGAGGGTGGCGGTGGTGGCGGTGCCGGTGCCGGTGCCGGTGCCGGTGCCGGCCGCAAGCCGCTGGCGTGCCCGCGCTGCGACCAGCACTTCGCCAGCGAGTTCCGGTTCCGCCAGCACCAGCGCGTCGAGCACGACATCTGCGTCATCATGTGCAGCCAGCTCGACTGTGGGAAGATCTTCGACACACCCAAAGAGCTGGTCCTCCATCAAAAGCAGCACAAGCTCTCCAGCAACCTGTGGTGCCGGCTGTGCGGGCTCCAGTTCAGCTCCAGTGCCGGCGCCGAGCGGCACCTCGACGTCCACCGCAAGAAGACGTTCGCGTGCCCCGTGTGCGCGCGCAAGTACGGCGAGAAGTACCTCGTCATGAAACACGTGCCGCAGCACTTCGAGACCGTCATCCACATGTGCAAGGTCTGCGGGAAGCTTTACCAAGCCAAGAACAGACTCATCGAACACTCCAAGACCCACGCCAACGTCAAAAACTACAACTGCTCGTATTGCGCTAAAGGCTTCACTTCCATCTACAAGCTCAAACAGCATCAGAACATGCACACGGGCCTCCGACCTTACCGCTGCGTCGCCTGCACTAAAGACTTCGCCAACTATTCCAACTGGTTCAAGCATTTGCAGAAAATACATAAGATTGATCCGAAAACTATAAAGAAACCAGTTGTCAAGAACATTGAAAAAGAAAATGTGGCCGAAGAGAACTCCAGCTCACAGAACAGTCTAGTAGAAATGGATACTCTGAGTGTTGTGCCGGATAACATAGACATGCCGCAGGAGTTGGTGAAGGATGAGGCTGTGGACCTGGACAGCATCAACCCTTCCATCGCGCCCGGGACCGTCGAGTTCACTGTGCTGCCGCCCGCTGCAACACTTGTTTCAGATGCTGCGCTCCCAGCGTCGACGCTGGGCATGCCGCGCGAGTACGGGCCCGACTTCACGGCGGCGGAGTGCGGCGGGCGACTACTGCACCTGGACGACCACATGCTCCCGCACATCGACCCGCTGCTCATCAACGCGGCGTCCGAGCCCCGCACACCCACCAGGTACCACTTGGACCCAGTGGACCCGGGCCAGCCGGACTGGGAGATCACCGCCAAGTACCACCACCTGGGAGAGATGGGCGCCACCCGCCTCGCGGTCATCAATACAGacatattttga
- Protein Sequence
- MAMAFVSGQQALKLTTIDLVGGILCSICRLTFKNKKEYDLHYSQHNLGKDEIVYTCVICLKDIAGYPSFRGHCYTIHVIKDRFKCEHCHKLFSKSSSLKDHIASVHKFQCSCCKREFPTKKELQLHKIIHMNDKPPYNCQTCNENVDCIDACELHIDLHSVSLYSCPICSEKIDDKVQAVDHLTIHFGNVLNNSNDTDDSDSEYNDKPEDSSIDLLGGILCKVCFTIHKNRAELDLHFSQEHLGMSVSYVCNICRKDFQKYTQFGQHCYEHITKNRFKCESCEKSFSRLARLVTHTEAFHARPEGGGGEGGGGEGGGGGGAGAGAGAGAGRKPLACPRCDQHFASEFRFRQHQRVEHDICVIMCSQLDCGKIFDTPKELVLHQKQHKLSSNLWCRLCGLQFSSSAGAERHLDVHRKKTFACPVCARKYGEKYLVMKHVPQHFETVIHMCKVCGKLYQAKNRLIEHSKTHANVKNYNCSYCAKGFTSIYKLKQHQNMHTGLRPYRCVACTKDFANYSNWFKHLQKIHKIDPKTIKKPVVKNIEKENVAEENSSSQNSLVEMDTLSVVPDNIDMPQELVKDEAVDLDSINPSIAPGTVEFTVLPPAATLVSDAALPASTLGMPREYGPDFTAAECGGRLLHLDDHMLPHIDPLLINAASEPRTPTRYHLDPVDPGQPDWEITAKYHHLGEMGATRLAVINTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654722;
- 90% Identity
- -
- 80% Identity
- -