Ccan018615.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637481.1:9004902-9014138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0023 0.18 13.5 0.1 2 23 214 235 213 235 0.97 2 12 3.5e-05 0.0027 19.2 1.5 1 23 241 264 241 264 0.96 3 12 0.25 19 7.1 3.4 1 23 277 299 277 299 0.98 4 12 2.9e-05 0.0022 19.4 2.2 1 23 946 968 946 968 0.98 5 12 0.18 14 7.5 1.0 2 23 974 996 973 996 0.96 6 12 0.0018 0.14 13.8 2.1 1 23 1004 1026 1004 1026 0.97 7 12 0.00059 0.045 15.3 4.2 3 23 1031 1051 1030 1051 0.98 8 12 0.25 19 7.0 0.6 3 23 1065 1086 1063 1086 0.95 9 12 0.0005 0.038 15.6 1.9 3 23 1094 1114 1092 1114 0.98 10 12 0.0003 0.023 16.3 3.7 2 23 1121 1142 1121 1142 0.98 11 12 0.00054 0.042 15.4 1.3 1 23 1148 1171 1148 1171 0.97 12 12 0.0013 0.1 14.2 0.6 2 23 1176 1198 1175 1198 0.94
Sequence Information
- Coding Sequence
- ATGGATTTGGACGAGCCAAATAAACTATTAAATTCCAACAAAATGTTCCAACAAATTGTTCTTGATGAAAACATCCTGAATCATCCTCCAACAATGTCTAAAGACGTCAAGGAAGGTGTAGCTTCGAATTATAAAGTGGAATTGACTACGAAACGGGCTGTCGAACTTTTGCTTGAAGGAAGACTTCGTAGCAAAGTTTGTCGATATTGTTTGTGTGTGGAGTCTGAGCTCTCTGATCTGGACCAAATAATGCAAATAGCAGGAAAGGGGACGCTCTACAAAGTGTCTATTCGGGATATGGTCGCCTGTTTCCATCCTTTTCAGACACAGACTGATCCCAACTTCCCGAGAAAAATATGCAACAAATGCCTGAACCGTACCATCAGCGCTTATCTCTTCACACAGCAATGCGAGCAGTCGGAACGAGCCTTACGTAACTGCTTTGAAGACATGTATGCTAAGCTAGAAAAGCTAGATCCACTAGATAAAACCAAAAAGCGAGGCAGACAGAAAATGAATCCAAATTACAATGCCCTGTACACAGAGCATGAAAAGGTTATTGACTACGCTGAACCTATTCGGAATATTGTAAACACAAAGTGTGTGTCACTCAGTAACGAGAAATACATGTCGGATTTGGAGTGCCCAAAATGCTGgcaaatattttctaaaatcgAAGATTTGATAGTTCACGAGCGAAGCCATCCGAATAGCATGTGGTTTAATTGCCGTTTGTGTGGTAAATCATTTGTGAAACGAATTCAATTGAAGCGCCATTTAAAACAAGCGCATAGTAGCCCGGAAATAGCAGTAGAGGAAAAGCACATGTTCCAATGCGGCACTTGTGGCTTCAATTGCGATGATCACAGCCTCTATTTGCAACATGTTGAGAAACATAAATTCCAATCGGTTTTGGAACATTTGGTTGAAAAGAAAATGGATAAACTGTGCACCGTATGTTTTGACAAGAGGCCGAAGTTGACGGATTTGGATAAAATGGTGCGGCTGCATGGTGGATATCCTGGCGTTACAGGGGACAAGAGTTTGTACAGCATCTTAGGCTCCACATTGCCTGATCGGAAATCCTACAAATATCAAGAATTATTTGTTCCTCATCATGCAAAAATCATGAAATTTGTTAAACTGACCAAAGATAAACAGCCACAGAAAGAAAGACCAACATATGGATCCAACATgaatcaaataataatatcaaacCCTTTGGTAATTTCTAATGATACAGTTAACTGTGATGAAATGTACTTATTCTTCTTTTCGGATGCCATTTATTATAAAGATAATGGCAAAGAAATACATTGTGTGGATAGAAAATGTTCAAGTAACGTTGTTAATCAATATGTGGATGATTCAGAAGAAAAAGTTTCAACTGTGACAAAAGAAGAAGCAAATAAAGATATTGCAATTCTAGAAGACGAATGCGTAAATGTTGAAATTGGCGCAACACTACACAATGTTAATTATTCTTTCAGCATTCCAAATGTCGATGAAAATCAAGAGTTGAATGTTactgaaaacaaaaatattgGAAAGACAACACCAGTTAATAAGACACTATGCAAAATCTGTTGGGTATTTAAAAAACCTACTTGTAAAACTTGTATTGATGAAAAAGCTGATATTGAAGAGATTGATGATACTAAAGATACATGCAAATATTGCTGGCTCTTCAAAACATCAGACAAATGTGATGTTTGCAAAAATCCTACATATTCCAATATAAccacaaaaacaaatatatttgctGATGAAGATTCTATAAAGATAGAAACTACAGAGACTGATTTGCAAAGAAAAAGAAAACTAACAGAAGATGTATCTAAACCTAAGAATAAGAAATGGGAATGTCACATATGTTTGACTACTAACATAGAAGAAAGATTAAAATGTATCTGCTGTGAATTTAACAGGAATAGTCAAGATAACATTATAAAAGTAAATTTAGACTGTAAACATccttttaaaatgtttaaatttgATGAAACTTCAGCACTTAAAGATGCAACAGCAGAAAATGTGTCAACTGCACTTGATGATGATAAATGGCGGCTGGATGATGTGAACATGATTAATGCTGAAAATATGCTCATGGATGATTCTCATCTTCAAATACCACATAAGCCTAATATTTCAGATACGTTCAAAGCATTTGGGTTTACGGAATCAACAGATGCCCCTGAAGAAATGGATATTACAGAAGAAGATAACGCCCAAATGAATTCCCCTGCCAACTATACTGGAACAAAAATATGCGAAAAGTGCCTTAATAATGCTATAACTTCGTATGTGTTCATAAACCATTCCATATACACTCGGGACAGGTTAAATATATGCATTACATCCATGCTAGACAGTCTACAGAAAATGGACGATCCAGAGGGTAATATATTTATAGAAATAGCAAAGGAGtccattttaccaataaaagaGCAAGATTATTTCGATGACAATCTACTTCTCGAGGAAGATGAAGTGGATGAAACTAAATTAAAAGTGGATGTGCTTGAAGATGAATTTAGAAAACCAGAAAGTGATGAAAGTGAATCtgaacctgaaataaaagactaCATCAATGCTTTCCTCAAAGAAGAGAGCCAAGATATAGATATATTCAATGAATTTAGCGTTAAAAGGGAAACAGAGATAGATAACCCGGCTAAAAGAGTGACGAAAACCTATACCAACAAAAGACTTGTCAATGGATATCAAGTTAAATATGCATCGGATAATGAAGGATACAATTCTTTAGACGATGTCAGCGAATTTCTCAcgtttaaaactaaaaaaaaacctaacaaacgGTACTATAAGTACAAATTCAGTTGTCCAATCTGCAGTAAAAGCTTTATCACAGACTTCCACCTCCAAAGACATGTCTTAAAACATGTTCACAAGAAAGTTGAATGTTACATGTGTAGAAACCAATTTAAATCTAAATTCTTTCTTTATGAACACATTAAAATGGTGCACATTCAAGACAAGAAAATATACTTCTCCTGTAAAACTTGCGGTAGGACATTTGAGGATGAAAATAGATTGAGAGCGCACGAGCACTCGCATTTGTCGAGAGACTGTCACTTGTGTGGCAAAATCTTTGTCAGTCAAAGACATTTTGACAGTCACATGCAAAGGCACGCTGTCAAGATGAATCTGGTCAAAAACAGCAGTCAAATTTGCAGTTTCTGTGAGAAAGACTTTTCAAACGACAACCGCCTTTCCTTGCATGTCAATAAGatacatttacaaataaaaccCTATGGCTGCGACATGTGCGAACGACAATTCTATACTGAAACCAAtttgaaaaaacataaaaagacaCATGATATGAAATCTAAAGAAAAATGTGAATTGTGTAAGAAGAAATTTAAAACACGGAAAAATATGGTGATCCATCTTAGAAAACATACGGGGGAGACTCCCCACCGCTGTCCTCTTTGTGGAAAAGCATTTTATTCCGAATTAAAAGCTAAAAACCATATGAGGATCTACCATGGAGGAACGTTATACTGCAAGTTATGCAAGAGTGTgttctcaaacaaaaatgatcttaaaactcatgtTATCATGGTTCATAATCACAATGCGTTGTTATAG
- Protein Sequence
- MDLDEPNKLLNSNKMFQQIVLDENILNHPPTMSKDVKEGVASNYKVELTTKRAVELLLEGRLRSKVCRYCLCVESELSDLDQIMQIAGKGTLYKVSIRDMVACFHPFQTQTDPNFPRKICNKCLNRTISAYLFTQQCEQSERALRNCFEDMYAKLEKLDPLDKTKKRGRQKMNPNYNALYTEHEKVIDYAEPIRNIVNTKCVSLSNEKYMSDLECPKCWQIFSKIEDLIVHERSHPNSMWFNCRLCGKSFVKRIQLKRHLKQAHSSPEIAVEEKHMFQCGTCGFNCDDHSLYLQHVEKHKFQSVLEHLVEKKMDKLCTVCFDKRPKLTDLDKMVRLHGGYPGVTGDKSLYSILGSTLPDRKSYKYQELFVPHHAKIMKFVKLTKDKQPQKERPTYGSNMNQIIISNPLVISNDTVNCDEMYLFFFSDAIYYKDNGKEIHCVDRKCSSNVVNQYVDDSEEKVSTVTKEEANKDIAILEDECVNVEIGATLHNVNYSFSIPNVDENQELNVTENKNIGKTTPVNKTLCKICWVFKKPTCKTCIDEKADIEEIDDTKDTCKYCWLFKTSDKCDVCKNPTYSNITTKTNIFADEDSIKIETTETDLQRKRKLTEDVSKPKNKKWECHICLTTNIEERLKCICCEFNRNSQDNIIKVNLDCKHPFKMFKFDETSALKDATAENVSTALDDDKWRLDDVNMINAENMLMDDSHLQIPHKPNISDTFKAFGFTESTDAPEEMDITEEDNAQMNSPANYTGTKICEKCLNNAITSYVFINHSIYTRDRLNICITSMLDSLQKMDDPEGNIFIEIAKESILPIKEQDYFDDNLLLEEDEVDETKLKVDVLEDEFRKPESDESESEPEIKDYINAFLKEESQDIDIFNEFSVKRETEIDNPAKRVTKTYTNKRLVNGYQVKYASDNEGYNSLDDVSEFLTFKTKKKPNKRYYKYKFSCPICSKSFITDFHLQRHVLKHVHKKVECYMCRNQFKSKFFLYEHIKMVHIQDKKIYFSCKTCGRTFEDENRLRAHEHSHLSRDCHLCGKIFVSQRHFDSHMQRHAVKMNLVKNSSQICSFCEKDFSNDNRLSLHVNKIHLQIKPYGCDMCERQFYTETNLKKHKKTHDMKSKEKCELCKKKFKTRKNMVIHLRKHTGETPHRCPLCGKAFYSELKAKNHMRIYHGGTLYCKLCKSVFSNKNDLKTHVIMVHNHNALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -