Ccan036461.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637498.1:9385807-9411851[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0005 0.038 15.6 0.3 1 23 252 274 252 274 0.98 2 12 0.26 20 7.0 1.6 1 23 281 303 281 303 0.93 3 12 0.59 46 5.9 1.7 1 23 307 329 307 329 0.92 4 12 0.00045 0.035 15.7 3.8 1 23 334 357 334 357 0.96 5 12 0.063 4.9 8.9 0.1 3 23 364 385 363 385 0.94 6 12 3.1 2.4e+02 3.6 0.2 2 20 395 413 394 413 0.92 7 12 0.016 1.3 10.8 0.2 2 23 668 690 667 690 0.94 8 12 0.00024 0.019 16.5 3.0 1 23 695 718 695 718 0.97 9 12 0.00022 0.017 16.7 0.3 3 23 746 766 745 766 0.97 10 12 6.5e-06 0.0005 21.5 0.2 1 23 772 794 772 794 0.98 11 12 1.2e-05 0.00096 20.6 0.2 1 23 800 822 800 822 0.98 12 12 0.0064 0.49 12.1 3.7 1 23 828 851 828 852 0.96
Sequence Information
- Coding Sequence
- ATGGATATAATAAAGGAAGATTCCTCAAATACGTCGCTAAAATTGCTAACTTGTCGGGCTTGTTTGGCTACGGATGTTAAACTGTTTAACATCTACGAAAACAAACTTGTAGATGCTTTTGCTCATATTACAGGAACTCCCGTGCTGGCAACAGATGGGTTACCGCAGCACCTCTGTTGTTACTGCCGCAGAGCTCTGCTCAAGTGCGGAGTATTCAGGGCCAGAAGCCTCCGTGCCCAGCAGTGCCTTAGAGCCAGGCCACTTGATCATGAGCTAACCACAGACTACATCCGAACTATAGACCGACACACGCATAAACTCGTCCTACTCACGCAAACCAGAGTCGAGACCACAGACTACCGAGACACACTAGAGCTTGACGTAAAAAAAGAAGAATCAGAAACAGACAATGTCTTCCTAGAATCAGATGATTTGAAATTAGAATATGAAATGAATGACAAAGATACCGCAGAAGATGCTCAAGATTTTAGCGATGATAATGGAGAGCATATATTCGTTGCTACAAATCCAGTGGGAGATAAAAAGGTCAAAGCTAGGAAAGGGAGAAAGAAAAAGGtagaagaaaagaagaaaaaaattaaaaagaggaCGTCGGATAACGATTATTTGCCGGATTTTGATTTTGCAAAGTTTGAGAGTAGTTATAATGTTGAAATCATGGCATTGACTAAGGAGCAACAACTAGAAGAGATACGCGCGAGGAAACAGAGCGCCAACTACCAATACGCGGCGTACAAGTGCGAAGAGTGCGGTAAAGGTTTCATGGCTAATGACGCCTATAACAACCACAAGATACGACACAGCCCGAGTATGGGCGCCCACGCGTGTGAGATCTGCCTGGTGCGCTTCAAGCGACAGTCCCGCCGGCAGGAGCACCAAGACCTTCACCGGCTGAAGTTTCTGTGCAAGGAGTGCAGCTTCGTGTCCAGAAACAGGTATCAAGCGAAGAAGCATTTCGAGTGGCATTCCGGGAAGATTCACGTGTGTAAGCACTGTGGGGCTAGTTTCACTAAGAGCTCGACGTATCTGTCGCACGTGCGTCTCCAGCACCCGGCGATGAACGTGGCCTGCGACGTGTGTGGTGAGACGTTTGTGGGCCGGCTGGGGCTGCTGCAGCACAAGTCTCGCGCGCACcagATAGCGTCGGTGAAGCCAGAGTCGCGGTGTGGAGAATGCGGTGCGCAGTTTGAATGCGCAGACGCACTCGACAAGCACATGCCTTGCGACCCGCATGCCAGggTTGATCTCATTGAGAAGCGGGTGGCTGATTGTGCGGCGTCGACAGCTACCAAGGCCCTCGAAGAAGCTGTCGCGAATCTTCAGTTGGAGCTGAACGACAGGGAGCAGGAGCTTTTGGTGAACGACGTGCAGGTGTCCAACGTGCCGGAGGAGCCGGGCGAGAGCGCGGCCGGCCTGGCCACGAGGATCGGCGCTAAGCTGGGCGTGGAGCTGGACGTGCGCGACGTCGTGTCAGTGCACCGCGCAGGTCGTGCACGCGAGGCGGGCCGGCCGCGGCCCCTCGTGCTGCGCCTGGCGCGCCGCGCCGTCCGCGACGAGCTGCTGCGGggcgcgcgcacgcgccgcgGCGCCACCACCGAAGGCCTGGGCCTGGCCTCCGCGCCGCAACGGTTCTATGTGAACGAGCGGCTGACGGGGGCCAACCGGCAGCTGTTCCAGCGGGCCCGCgaggccgcacgcgccgcagccTGGCGCTACGTCTGGACACGGGACGGCAAAATTTTCGCTCGTCGGTCTGACGATGTGGACCTGCGGAACGTGAGATGGGACCTGCTATCACAAATTGAAAATGTTAATGACATGGTTGGCACCTTCAATCaactaattataaatatattcgaCATGCACGCACCTATCAAGTCAACACTAGTCAAGGTCCAGTCTTATCCTTGGATCACCGACACAATCAAATTAATGATGCGGCTTCGTGACAACGCTGCAGCGGAGTACCACAAACTTAAGCCGTGTCTAGTATGTGGCGAAACGCTGTCCACAGAACAGGAGCTACAGGAACACACTAAACAGAGACACAGCACTGACGAGTTCAAGTGTCTACAGTGCGACAAAACGTTCGCCAGCTCCAAGTCGTACGAGGTGCATCACCAGCGCGTGCACCTGAACGTGCGCTGGCGCAAGTCGCGCGAcaagcgcgcgcgccgcgcgcccgGGGACGCGCCCAAACGCAAGGAGGCCATGTGCGAGATCTGCGGGAAGGCTTGCGAGTCTAACGCGGCGCTGGTGTATCATCAGCGCTCTCATACTGGCGAGCGCCCCTACAAGTGCTCCCAGTGTCCTAAGTCCTTCACCATGCCGCAGGCTCTCATCAACCACCAGCTAGTTCACTCCGACGAGAGGCCCTACATGTGTTCTGTGTGCCCGAAGGCCTTCAAGCAGAAAGTTGCGCTGCAGTTGCACAGTCGGGTGCACACTGGTGAACGGCCGTACAAGTGTTCGTTATGCGACAGCTCGTTCAAGCAGGGCCCGCACCTGCGCACGCACGTCAAGCTGATGCAccacgcgcccgcgccgcgccggaaactgtaa
- Protein Sequence
- MDIIKEDSSNTSLKLLTCRACLATDVKLFNIYENKLVDAFAHITGTPVLATDGLPQHLCCYCRRALLKCGVFRARSLRAQQCLRARPLDHELTTDYIRTIDRHTHKLVLLTQTRVETTDYRDTLELDVKKEESETDNVFLESDDLKLEYEMNDKDTAEDAQDFSDDNGEHIFVATNPVGDKKVKARKGRKKKVEEKKKKIKKRTSDNDYLPDFDFAKFESSYNVEIMALTKEQQLEEIRARKQSANYQYAAYKCEECGKGFMANDAYNNHKIRHSPSMGAHACEICLVRFKRQSRRQEHQDLHRLKFLCKECSFVSRNRYQAKKHFEWHSGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQIASVKPESRCGECGAQFECADALDKHMPCDPHARVDLIEKRVADCAASTATKALEEAVANLQLELNDREQELLVNDVQVSNVPEEPGESAAGLATRIGAKLGVELDVRDVVSVHRAGRAREAGRPRPLVLRLARRAVRDELLRGARTRRGATTEGLGLASAPQRFYVNERLTGANRQLFQRAREAARAAAWRYVWTRDGKIFARRSDDVDLRNVRWDLLSQIENVNDMVGTFNQLIINIFDMHAPIKSTLVKVQSYPWITDTIKLMMRLRDNAAAEYHKLKPCLVCGETLSTEQELQEHTKQRHSTDEFKCLQCDKTFASSKSYEVHHQRVHLNVRWRKSRDKRARRAPGDAPKRKEAMCEICGKACESNAALVYHQRSHTGERPYKCSQCPKSFTMPQALINHQLVHSDERPYMCSVCPKAFKQKVALQLHSRVHTGERPYKCSLCDSSFKQGPHLRTHVKLMHHAPAPRRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -