Ccan034323.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637496.1:5226639-5229239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.51 39 6.1 3.0 1 23 76 99 76 99 0.91 2 17 1.4 1.1e+02 4.7 0.3 2 23 124 146 123 146 0.95 3 17 0.012 0.92 11.2 2.7 2 23 171 192 170 192 0.97 4 17 0.00027 0.021 16.4 0.6 1 23 196 218 196 218 0.98 5 17 0.19 15 7.4 4.3 1 23 223 246 223 246 0.97 6 17 1.1 81 5.1 0.2 2 23 254 276 253 276 0.82 7 17 0.00012 0.0091 17.5 0.4 3 23 285 306 283 306 0.96 8 17 1.2e-05 0.00093 20.6 4.4 1 23 312 334 312 334 0.98 9 17 1.2e-07 9e-06 27.0 2.5 1 23 340 362 340 362 0.98 10 17 1.5 1.2e+02 4.6 2.9 1 13 368 380 368 381 0.92 11 17 0.013 1 11.0 1.2 1 23 469 492 469 492 0.96 12 17 0.037 2.9 9.7 0.7 2 23 519 541 518 541 0.96 13 17 0.014 1.1 11.0 0.6 1 23 563 585 563 585 0.96 14 17 0.088 6.8 8.5 0.4 2 23 590 611 589 611 0.92 15 17 0.079 6.1 8.6 0.5 1 23 616 639 616 639 0.89 16 17 0.065 5 8.9 0.8 2 23 647 669 646 669 0.86 17 17 0.0028 0.21 13.2 3.5 2 23 677 699 676 699 0.95
Sequence Information
- Coding Sequence
- ATGATAATCGCACTCGAGTCGGACACAGATGAAGAAAAAGATGACGATCGCTCCACTCGCAAAGAAAAGAGACATTTCAAGACTAAGACTCCAACTAAAGTACCTGCAGTTAAGAGCAACCCGGACAGAAAACCAGGACGGAATGAGTTCGACTTGCACGTCCAGAATCTCCGGACGATCATGAGGTGTTCCAACGCCACACCATTAAGATTACATGGAAAGTGGTACACATGTTGCTGCTGCCCAGAACGTTTCGATGACACTGCGGCTTTGAAACGGCATACAGCAGAGAAGCACCCCACTGGACAAGGCGCATTCTTTGGTCGACACATTGCACAACTAATCATAAGAGTAGACATAACAGATTTACAATGCAAACTTTGCGAAAATAAAATTGACAGCATTCAGGAGTTAACGGAACATTTAAAGAAGGACCACTTAGAAAAAATACATTCGGTTGATAAGAACTATATGGTACCTTTTAAATTCGAGTCTGACAAAACAGAACTAGAATGCGTAATATGCAATCTTGAATTTCACAATTTTAAAACACTTGTACACCATATGAACATGCATATCCCGAATTTCGTGTGTAAGACTTGCGGCAGCGGGTATGTGAATCAGAGAAGCTTGCAGAATCACGTTAGGCAGCACGCCAACGGGGAGTACAAGTGCTTGGCCTGCCATCGGATCTTCGACAACCATCTTAAATTGAGAGAGCACCGGAAATCCGTACATCTAGGCTTGAACAAAAGAAACAAGTGCGATTTCTGCGATGAACGCTTCACTGGAATTATAGCCAAGAACATACACATGGTCAATGTCCATGGTAAACCTGCCATTGAAGTAATATGTCCAGCATGTGATAAGTCTTTTAAGAACTACAAATACCTCGCCATCCACAAGCGGATGTTTCACCTGATGGAGAAGCGGCACAAATGTCCCGAGTGCGATAAAATGTTTTTCTCCACGCATGAATTGAAAAACCACATGCTGATGCACACAGGACGAAAGGACTTCCACTGTCCTATATGCGATAAGTCTTTCGGCAGAAAATACACGCTAACGCAACATATGAGGATCCATGCCGATGATCGGAGGTTCAAATGCGAACACTGCGAAATGACGTTTATCCAGAAATGTGTGGGACGGAAGCCCCGGAGATCCATAATCACTATCCCCCGCGAAAGTAAGGACAACAAAGCTTCCAAACGGATAACCATCGTACTGAATCCAAAGGCGGAAAAACCTCGAAAGAAGCGGTGCAAGATAATCGAAATCAAACCAACGGCCGCCAATGTTTCATTCAAGAAACTAAATGAGGCGCACAAACACCAAGCCAATCTGAAAGAGATACTACTATATTCGAACGCGACGCCTATCCGCTGCCGCGGGAGCGTGGGCTACGCTTGTTGCTTCTGTAGCCTCCAGTACCGGGATCCAGCTGAGCTCAAACAACACACAATTACGTCCCATGATGAACCAACGAAAGCGAATTACATGAAAGGCGAATCTATCGTCGGGTTTATCGTAAAACTCGACATAACCTCACTCCGATGCAATATCTGCTCATGTACCATAAGAGAGCTTGGACAGTTGATGGAACATCTAAAGACCGCTCACGACCGGCCTATAATCACCGATTTGAAGAACCATTTAGTCCCGTTTAGGTTCGAGTCGAATATGCATATCTGCGTCGAATGTTCGACGGAGTTCAGCAACTTCAAAGTGTTGTTGGCTCATATGAACGAACATTACAGAAATTGTATTTGTGAGATTTGTGGAGCTGGGTTTGTTACCAAGCGGATACTACAGGCGCATAGTTATAGGCATATAACTGGTGATTTCAGCTGCCGCTATTGCCCTAAGGTATTTGATGCTAAGTTGAGAATGCAAGAACACGAGCGAAACGTCCATGTTCTAATGAACAAGAGGAACAAATGTGGTTATTGTGGGGAGAAATTCACGGATTACACTAAAAAGAATGACCACGAAGTGAAAGTTCACGGGGTGAAGCCAATAGTCCTGCACTGTCAGGCTTGTACTAAGACGTTTGATAATCAGAGATCTCTTACAGTCCATACTAAGACATTCCATTTGATGCAGCGAAGGAGCCCGAAATCGGCGAATCCGCTCAAACTTTAG
- Protein Sequence
- MIIALESDTDEEKDDDRSTRKEKRHFKTKTPTKVPAVKSNPDRKPGRNEFDLHVQNLRTIMRCSNATPLRLHGKWYTCCCCPERFDDTAALKRHTAEKHPTGQGAFFGRHIAQLIIRVDITDLQCKLCENKIDSIQELTEHLKKDHLEKIHSVDKNYMVPFKFESDKTELECVICNLEFHNFKTLVHHMNMHIPNFVCKTCGSGYVNQRSLQNHVRQHANGEYKCLACHRIFDNHLKLREHRKSVHLGLNKRNKCDFCDERFTGIIAKNIHMVNVHGKPAIEVICPACDKSFKNYKYLAIHKRMFHLMEKRHKCPECDKMFFSTHELKNHMLMHTGRKDFHCPICDKSFGRKYTLTQHMRIHADDRRFKCEHCEMTFIQKCVGRKPRRSIITIPRESKDNKASKRITIVLNPKAEKPRKKRCKIIEIKPTAANVSFKKLNEAHKHQANLKEILLYSNATPIRCRGSVGYACCFCSLQYRDPAELKQHTITSHDEPTKANYMKGESIVGFIVKLDITSLRCNICSCTIRELGQLMEHLKTAHDRPIITDLKNHLVPFRFESNMHICVECSTEFSNFKVLLAHMNEHYRNCICEICGAGFVTKRILQAHSYRHITGDFSCRYCPKVFDAKLRMQEHERNVHVLMNKRNKCGYCGEKFTDYTKKNDHEVKVHGVKPIVLHCQACTKTFDNQRSLTVHTKTFHLMQRRSPKSANPLKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -