Ccan036516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cenopis cana
Gene Symbol
-
Assembly
GCA_951800055.1
Location
OX637498.1:9888647-9891988[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00058 0.044 15.4 1.4 1 23 36 59 36 59 0.95
2 12 0.00069 0.053 15.1 3.6 3 23 66 86 65 86 0.98
3 12 0.00047 0.036 15.6 3.5 2 23 100 122 99 122 0.95
4 12 0.00012 0.0089 17.6 0.7 2 23 130 152 129 152 0.96
5 12 2e-06 0.00015 23.1 1.9 2 23 158 180 158 180 0.95
6 12 0.065 5 8.9 5.5 2 23 188 210 187 210 0.97
7 12 0.0007 0.054 15.1 1.8 3 23 217 237 216 237 0.98
8 12 0.0001 0.0081 17.7 1.0 1 23 242 265 242 265 0.97
9 12 0.00069 0.053 15.1 0.4 2 23 280 301 279 301 0.96
10 12 2.7e-06 0.00021 22.7 1.5 1 23 339 361 339 361 0.99
11 12 0.00024 0.019 16.5 0.2 2 23 368 390 367 390 0.96
12 12 0.3 23 6.8 0.9 2 21 1081 1100 1080 1101 0.92

Sequence Information

Coding Sequence
ATGACCCTTGTTCACCCGGCAGAAGATATATCCTTAACTCCAGCATTACATCGAGAACCATCGATTCCTCAGACTCAAATTCAACTAGTTCCCCCGATAGATGGATACAGCTGCCCGGAATGTAAACATATTACAGCAACTCCGGACCACTTTATGAAACACATGCAAGATGCGCACCCGAAGTCTCAAGTGGCTTGTAAATTATGCCACAAAGtttacaaaactgtcaaaagttTGCGAAGACATGAGAAAACTCATGCTGGGAAAGttgaaaaaaagcaaaaagtggGAGATTTACCGTGTTCTCATTGTCGTAAGAAGTTTAGTACTCAGACGGCATTACACTGGCACATAGAGCGGAATCATACAGATACTGAAAAGACAAGTACTTGTAAGATTTGCGGTAAAGAACTATCGGACCATGCTAGTTTAAAACGACATCTAGAAATGATTCATTCGTTAGAGAGCGCTCGCTGCTCTATATGTAATAAGACTTTTAAAAGCTTAACAAACTTACAGAGGCATATGAATGCGACTCATCCACCAGAAGATGCCGCACAGACCTGTGAAGTTTGCAACAAAACTTTTAAATGCTCATTGCATTTGCGAATTCACTTTCGGACTGTTCATGTACCAGAAACTGTTTTCTGTGATGTGTGCAACAAAGGATTTCCATCAAAGAAATACATGTTGAAACACAGAAAAACCCATGATGTTAAAGCGTTCCCATGCAGTGTTTGCAGCAAAATGTTTAAGAGTTCAGACGATGCCAAAAGACATACAAAGAGAATACACATGAAGACAGAACCTTCTATAAAACCACAGAGAAAATCTAGCGTTTGTGACGTGTGCGATAAAGAATTCTCACGCAGAAATGACATGGTTTTGCACAAAAAAATCCATGTTGACGTGAAATCTTATTCCTGCGAATTCTGTAGCAAATTATTCAAATGCGTCAGCCATGTCAGAAAGCACACAAAACACGTGCACATGAGCCATTCTGCATATTCAACGTATACCTGCGATGTATGTAAAAAATCGTTCAATTCAAAGATAAACATGGCAAAACATATTAAAACCCATTTCGCAACAAAAGACCTGCCTTGTGGTATTTGTGATAAATTATTCAAATCTAAAGGTGATGTTAATAAGCATTTGAAACGAGTACATATGAAAGGACTAGTAAGGAAAACCGACAATAcagaaacaaatacaaaaacggTAAATACAGGAGACGCGAACAGTAAAGAATACACAAATGATGTTCTTATGAATATTGAGTATACTGAAAAAGTTCTTGCTAACACAAAATACACAGTTAAGGCTCTCGAAATCACAGAATACACAGATGAGGTGCCTAGAAGTGAGGACTATACACTGGAGACCCTCGGAAACTCGGAATACACACTTGAAAGTATTGAATACTCATTGGAAGCACTTAAAAATACTGAGGAAGGACTAGGCAGTACAGATTTTATAGAAGAAGCTCTCGTTAGTACAGAATACGCAAAAGAAGCTCCCGAAGGTACAGAGTTTACTAACGATGCAACTAGTGCAACTCCTACAGACGAAGCTCTTCGAAGTATAAAGCTTGAGACAGTGTATGAAAGTACAAATAACTCAGAGCTTACAGATAATTCCTTTGGAAATACAGCTAGTAAAGCCCCAAGAAATACGGATATTCTAAAGGACGCCATAAAAAAATCCGATTTTACAATGGAAGACCTTGGAATGGCGGAGGAACCGATTGACAGTAAGAAATCTGAGGAAGCTTTTGGAAGTACAGATGTCGCCGAAAGTGTCAAAGCTTTCGGAGGTATAAAGTGCACAACTGAAGTTGCTGTAGATATAAAGTTCGCAGATAAAACCATTGGAAATTCAGAGAGAGCTCTTAAAAATACAGATATCATAAAGGATGCCATAGCAATTTCAGATTTTACAATTGAAGATTTTGCTATAACAGAAGAAACAGAAACTGCAAAATCTAAAGAAGCTCTTGATAATACAGTATTCAAAGAAACTCTCGGAAATATTAAGTGCGTAAACGAAGTAGCTGATGAGAAAGAATTCGCAAATATACCCGTTTGCGGTATAGCATCTAAAAAGAAACTTAGGCATAAAGATATCATAAAAGAAGCCATCGAAATCTCAGATTTCACTGTGGAAGACCTTGAAATAACAGAATACACAGATAATGCTGTTGAAAGTGCAGAGTCCGCAAAAGAAGCAATTGAAAGCATCCCTATGAAGAATTTCGAATGTCCAGTAGACATAGAGGAAACCATTGAAGATACAGATTTCATGGAGTCTATCGAAAATACAGAGTTCGCAGATAAATCCCTCGGTAATACAGATATAATAAAGGAGGCAATCGATTCAGCATTCACAATTGAAGACCTTGAAATTTCAGAGGACACCGTTGAAGGTATAATACCTAACAAAATCCCCGAAAATACAGAAATCATTGACGAAGGCCTTGGAAGAAGAGGTTTCATGAAAGCCGTCGGAAGCACAGGAAACGAAAATGAAGCACCTGGTGAAGAACTTATCGATAAAGAAGATACAGAGATTAAAGCGAACACAGACATTATAAATAACGCTGTCGAAAATTCAGATTTTTCTATAGAATACCTCGAACTTGCAGACTATGCAGGGGATGCTCTCGAAACTACAGGTTTTACCATGGAAGATCTTGGAATCACGGAATGTCCAGAGGTACTAGAAAGCACAGATTTTGAAGAAGCCCTCTGTAGTACAGAGTTCGGTAAGAAAACTAGTAGCATAAAGTTCACAGAAGTCCTTAGAAGTACAGACTTTACAGACAGTACTCTGGGTTTCATAGAAGAAGCCATGGGAAGTACAACAATCGAAACCGAAGCGCCTGCTGAAATAAAATTGACCGATGAAGCCTTGAAAAATACAGAGTTGACAGAAAAAGTCCTTGCAAATACAGATTTCCTAGAAGAAACTCTTAGGAGTACAGAGTTAGAAGAAAAACTTGGAAGTACTGATTTCACAGAAGCCTTAGAAAATACAGAGTGTTCCAAAATTACTCCTAGTTCTACAGAATTTACAGATAAAATAATTGGAAGTAATATAAAGGAAGGTATAGAGCATTCCAAATTTTCAATGGATGATCTTGGTATTACTGAATACACAGACAGTATTCTGAGTATAGATTACTCTATGGATGAAATGAAAATGGCAGACTGTCCTGAATCCCTAGATATCGAGTTATTGAATTGTCTGAAATGCGGAATCGATTTTAAGAATGATGTAGATCTGCACACACACTTGTGTGGTGGAGAGATGACATTGTTTCTTGATTTTCAAGACATGTAA
Protein Sequence
MTLVHPAEDISLTPALHREPSIPQTQIQLVPPIDGYSCPECKHITATPDHFMKHMQDAHPKSQVACKLCHKVYKTVKSLRRHEKTHAGKVEKKQKVGDLPCSHCRKKFSTQTALHWHIERNHTDTEKTSTCKICGKELSDHASLKRHLEMIHSLESARCSICNKTFKSLTNLQRHMNATHPPEDAAQTCEVCNKTFKCSLHLRIHFRTVHVPETVFCDVCNKGFPSKKYMLKHRKTHDVKAFPCSVCSKMFKSSDDAKRHTKRIHMKTEPSIKPQRKSSVCDVCDKEFSRRNDMVLHKKIHVDVKSYSCEFCSKLFKCVSHVRKHTKHVHMSHSAYSTYTCDVCKKSFNSKINMAKHIKTHFATKDLPCGICDKLFKSKGDVNKHLKRVHMKGLVRKTDNTETNTKTVNTGDANSKEYTNDVLMNIEYTEKVLANTKYTVKALEITEYTDEVPRSEDYTLETLGNSEYTLESIEYSLEALKNTEEGLGSTDFIEEALVSTEYAKEAPEGTEFTNDATSATPTDEALRSIKLETVYESTNNSELTDNSFGNTASKAPRNTDILKDAIKKSDFTMEDLGMAEEPIDSKKSEEAFGSTDVAESVKAFGGIKCTTEVAVDIKFADKTIGNSERALKNTDIIKDAIAISDFTIEDFAITEETETAKSKEALDNTVFKETLGNIKCVNEVADEKEFANIPVCGIASKKKLRHKDIIKEAIEISDFTVEDLEITEYTDNAVESAESAKEAIESIPMKNFECPVDIEETIEDTDFMESIENTEFADKSLGNTDIIKEAIDSAFTIEDLEISEDTVEGIIPNKIPENTEIIDEGLGRRGFMKAVGSTGNENEAPGEELIDKEDTEIKANTDIINNAVENSDFSIEYLELADYAGDALETTGFTMEDLGITECPEVLESTDFEEALCSTEFGKKTSSIKFTEVLRSTDFTDSTLGFIEEAMGSTTIETEAPAEIKLTDEALKNTELTEKVLANTDFLEETLRSTELEEKLGSTDFTEALENTECSKITPSSTEFTDKIIGSNIKEGIEHSKFSMDDLGITEYTDSILSIDYSMDEMKMADCPESLDIELLNCLKCGIDFKNDVDLHTHLCGGEMTLFLDFQDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-