Basic Information

Insect: Cenopis cana
Gene Symbol: prg
Assembly: GCA_951800055.1
Location: OX637471.1:9747106-9748888[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.054 4.2 9.2 1.8 1 23 173 196 173 196 0.90

2 10 0.0051 0.39 12.4 0.6 1 23 202 225 202 225 0.96

3 10 1.2e-06 9e-05 23.8 1.4 1 23 231 253 231 253 0.96

4 10 5.9e-07 4.6e-05 24.8 4.9 1 23 259 281 259 281 0.99

5 10 0.0012 0.095 14.3 1.4 1 23 287 309 287 309 0.97

6 10 0.0013 0.1 14.2 0.5 1 23 315 337 315 337 0.95

7 10 0.00013 0.0097 17.4 1.0 2 23 428 450 427 450 0.95

8 10 4.7e-05 0.0036 18.8 2.9 1 23 456 478 456 478 0.96

9 10 5e-06 0.00039 21.8 2.8 1 23 484 506 484 506 0.98

10 10 0.0021 0.16 13.6 0.0 3 23 515 535 513 535 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.054	4.2	9.2	1.8	1	23	173	196	173	196	0.90
2	10	0.0051	0.39	12.4	0.6	1	23	202	225	202	225	0.96
3	10	1.2e-06	9e-05	23.8	1.4	1	23	231	253	231	253	0.96
4	10	5.9e-07	4.6e-05	24.8	4.9	1	23	259	281	259	281	0.99
5	10	0.0012	0.095	14.3	1.4	1	23	287	309	287	309	0.97
6	10	0.0013	0.1	14.2	0.5	1	23	315	337	315	337	0.95
7	10	0.00013	0.0097	17.4	1.0	2	23	428	450	427	450	0.95
8	10	4.7e-05	0.0036	18.8	2.9	1	23	456	478	456	478	0.96
9	10	5e-06	0.00039	21.8	2.8	1	23	484	506	484	506	0.98
10	10	0.0021	0.16	13.6	0.0	3	23	515	535	513	535	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATTATTGCTAATTTTCACACGCTGTGTCGCCTGTGTTTGAACAAGAGTTCCTTGATGGTGTCCATTTTCGGAGCTGCGCCTGACGATGAAACCAACTCTGCGTTAACCTCGAAAATCGCCGAGTTTGCCGAACTTCAGATGGACCCTAATGATGGCTTACCTGGAAGAATCTGCTACAAGTGCTTGTTCAAAGTAGATAAATGTTCCAACTTCAGACTGCAATGTATACAGAATGAGTCAAGACTGAGACAAATAACTAGTAGAGTCAATGAGCAAGAAAACTCAAATTCCTCAGAAATGTCTAACTTCTACACCACCACTCAAGATGTAAACAAACAGGATTACATTGTAGAGGACAGTGTTGTTATGGTGGTTGACCCGAGCCTGGACTATGACTCTTCGGAAGAGTCCGACAATGCAGATCAAGCAGATGCAGATACCACGGAACGAAACAATACCCCTGAAGGAGACCACATGCCTGAATCATTCTTCAAAAATGTATTCATGTGCCAGTATTGTGACCAAGCTTTCATTTCACAAGacaagtgtaaagaacacgagCTGGTCTATCATGATCCCAACTTACCATTCAAATGTATGGAGTGCAGCTTAGTTTTTCCTGAGCGGAGTCAGTATGTGCAACATACAAAGCAGGTGCATGGCAATGACAAGCCCTACCACTGCCCTGAGTGTGATAAGTCCTTCGGCCGCAGGTCAGACTTGAGAAAGCATTCCATAGTACATACAGGTATCAGACCTTATCAGTGCCATTACTGTCTCAAAAGCTTCTCTCGGAATACAAATCTTAGTAAACATCTGAGGATCCATGCCGGGCATAAGCCACATGTGTGCCCCCTGTGCCCAAGGAGCTTTGTGTGCCGTAATGACTTGCAGCGACATGTCTTAGTCCATTCTGGTATGAAACCATACGCCTGCCGAAAGTGCCCTTTGACGTTTGGGAGGAGAGATAAACTCATCAAACATGAAGTGAGACACGGTCCACTCAGCCCCAATCAAGTGCATGAGATAGACAATGACCAGGAGACTCATGACatggttgtcaatgtcaatcCCTACAGCAACTTACTCACATCTCCAACCCATCAAAATGCTGATTATGATCTCCCTAGAGTACCAGACCATATTTCTGGAGTTAGTAGCTTTATGAATCAAATTCACAAGAATCCAACCACATCAGGCAAACAAACATCATCTCCGCCGAAACCAAAACCAACTGTAACTAATAAAAATAGacctaaaaatattaaatgtcaCCAATGTCCAAAGAAGTTTTCCTCGCTAGATGCATATAAGACTCATGTTTCAATAGCACATATTGGCAATAGAGGATTCCAATGCAAGATTTGCTTCAAGAAATTCTCCCGCAAGAGGGAGCTTGACCGTCATGTGACCCTTCATTCTGGCATGAAGCCTTTCTCATGCGGCCAATGTGACAAAAAATTCAACAGGAAAGACAAACTGAATAAACATGAACAAACTCACGAATGCATGGTTGTGAACATGCCATGTATTGAGTGTGGGGTCACTTTTGAGAAGAAAGCTGATTTAGTGGCCCATATTAAGTCTCACTTCACAGACAATTTTGATGACAAGCCTGAGATTAAAAAAGAGGATGAGCCGGAGTTCCCAATTGATGAAAACTATTATGACTTGGAAACCTGA
Protein Sequence: MEDSYIIANFHTLCRLCLNKSSLMVSIFGAAPDDETNSALTSKIAEFAELQMDPNDGLPGRICYKCLFKVDKCSNFRLQCIQNESRLRQITSRVNEQENSNSSEMSNFYTTTQDVNKQDYIVEDSVVMVVDPSLDYDSSEESDNADQADADTTERNNTPEGDHMPESFFKNVFMCQYCDQAFISQDKCKEHELVYHDPNLPFKCMECSLVFPERSQYVQHTKQVHGNDKPYHCPECDKSFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVCRNDLQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHEVRHGPLSPNQVHEIDNDQETHDMVVNVNPYSNLLTSPTHQNADYDLPRVPDHISGVSSFMNQIHKNPTTSGKQTSSPPKPKPTVTNKNRPKNIKCHQCPKKFSSLDAYKTHVSIAHIGNRGFQCKICFKKFSRKRELDRHVTLHSGMKPFSCGQCDKKFNRKDKLNKHEQTHECMVVNMPCIECGVTFEKKADLVAHIKSHFTDNFDDKPEIKKEDEPEFPIDENYYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00149713;
90% Identity: iTF_01072823;
80% Identity: -