Ccan036460.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637498.1:9365577-9383586[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.042 3.2 9.5 0.8 2 23 272 293 271 293 0.97 2 12 0.0025 0.19 13.4 4.7 2 23 301 322 301 322 0.97 3 12 3.4 2.7e+02 3.5 0.4 1 19 326 344 326 348 0.84 4 12 6.2e-06 0.00048 21.5 2.8 1 23 353 376 353 376 0.98 5 12 0.0013 0.1 14.2 0.2 2 23 385 407 385 407 0.95 6 12 0.44 34 6.3 0.0 2 19 416 433 415 435 0.93 7 12 0.17 13 7.6 0.1 2 23 445 467 445 467 0.89 8 12 1.9e-06 0.00014 23.2 0.4 1 23 472 495 472 495 0.95 9 12 1.4e-05 0.001 20.5 0.2 3 23 524 544 523 544 0.98 10 12 5.9e-05 0.0046 18.5 0.1 1 23 550 572 550 572 0.94 11 12 0.025 2 10.2 2.1 2 23 579 600 578 600 0.96 12 12 5.9e-06 0.00046 21.6 2.0 1 23 606 629 606 629 0.96
Sequence Information
- Coding Sequence
- ATGACTGAAATCAAGATAGAAACGACGGAAGAGCTGTTGGCGTGTCGAATTTGTCTCGCCACTGATACGAAACTGTTTGGGTTACGTGAACACCAATTAAAGGATACTTTCGCCGATATAATGGGCACAGCGTGTTCAACATGGGACGGTCTGCCCCAGCACCTCTGCACCCTCTGCCGGGCACTTCTCCTCAAGAGCTCTGCGCTGCGGGAGCGCTGCCACCGTGCCCAGGACATGCTAAAACAAGCTCTTTTGCATCAACATTATTTAACTACCGACTTCATTCGCACCATAGACAGAATATCCAACCAAATATCACTTCAACTGACCATAGATCATCTAGACCAACCTATAGAAATCATTCATGACGAAGAATACAAAGATTATGACAAAATTGACAATGACGCGCCGCTAGAGGCTTTAGATAATGATTTCCTTAATGATGATTCAACTAACGAAGATGATATATGTTTAAAAGATATAGCAACAAACATTTCACCCgaaaaagaaatagaaaaatTGCCTAAGAAAGTGTTAAGGAAAcgtaaagtaattaaaaaagttaaaagtgtaaaaaagaaaataaaaaaggtGCCAAACATTGTCAAGAAAGGAACAGAGAAGGAGAAAGTAGAAGTGGAGAAGAATTTTAAGAGGAAGAAGAAGGGATTCAAAAGGTTTTTCAGTTGTGAAGAGGATTATATTAAGTTTGAAAATAATTACAACATTAGTATAGTGAAGGTGAGTGAAGAGGAGCAACTGAAAGATATGGAGGCGCGCAAGCAGTCGGCGAACTATGCGCGCGCGCACCTGCGCTGCGAGAAGTGTTTCAAGGGGTTCCTCTCCGAGGCCACTTTCGAGAACCATCAGAAAGTTCACGATCCGATAATGGGCAACAACGAGTGTCACCTGTGTTACGCGCGCTTCAAGCACCCGACGCGGCTGCGCCGGCACATGGAGACACACACGCTCAAATTCATCTGCAAACTTTGCCCGCTCGTCACTAGGCACCGaGGCATGGCTATGATGCATTCGGACTTCCACTCCGGCAAAACGTTCGAATGTAAATACTGCGGGCTCACGTTCAAAAAGAAGACTACGTTCAACACGCACATACGCGTTCAACATCCTCTAGAGAACGCCTCAGGAGGCACTTGTGACGTGTGCGGGGAGACGTTCATCGGGAAACGGGGGCTGCAGCAGCACAAGACCATGGCGCATAGGAAGATGCCGATTCCTGAGTTAAAATGCTCCGTATGCAACGTGCAGTTTGAGAACCTCGACGCCGTGGTGCGTCACGCGGCAGCTGACGGGTGCGACCCTAAACTAAGGTCGTGCCCGCAATGCGGCGAGACGTTCCTAACAGACGAGCAGTTAGACACACACGTTGACAGCGCACACGTGAAACAAGTCTACAAATGTGACGATTGCGACAAATCATTCGCGACCAAGTCTTCGCTCGGCACCCACGTGGACCGCGTGCATCTTAAGATAAAGCCGAAGAAGACGGGCTTCTACAAGTACCACATGTACCCCAAGAAAATGCAGGTGAAGCGGGTCGAAGAGATCTGCGAGATCTGCGGGAAGGGGTATCCGAGCTCAACCTGGCTGAAGTACCACCAGCGGACACACACAGGCGAACGACCGTACAAGTGTCCCGAGTGCCCCAAGAGCTACATGACCCCCGCCGCTCTACAGAGCCATTCCGTGTCCCACACGGGCGTCCGCCGCTGGCAGTGCTCGCAGTGCCCCAAAACCTTCCTGCACCAGTCTTCCATATATAAACATAAACTGGTACACACCGGAGAGAAACCATTCACCTGCCACATATGCAGCAAAACGTTCACGCAGTCGGGCTCGCTCGCCACGCACGTCAAATACGTGCACATGAAGCTCAAGCCGCCGCCCAGGCGCCGGCACCAGCCGACTTAG
- Protein Sequence
- MTEIKIETTEELLACRICLATDTKLFGLREHQLKDTFADIMGTACSTWDGLPQHLCTLCRALLLKSSALRERCHRAQDMLKQALLHQHYLTTDFIRTIDRISNQISLQLTIDHLDQPIEIIHDEEYKDYDKIDNDAPLEALDNDFLNDDSTNEDDICLKDIATNISPEKEIEKLPKKVLRKRKVIKKVKSVKKKIKKVPNIVKKGTEKEKVEVEKNFKRKKKGFKRFFSCEEDYIKFENNYNISIVKVSEEEQLKDMEARKQSANYARAHLRCEKCFKGFLSEATFENHQKVHDPIMGNNECHLCYARFKHPTRLRRHMETHTLKFICKLCPLVTRHRGMAMMHSDFHSGKTFECKYCGLTFKKKTTFNTHIRVQHPLENASGGTCDVCGETFIGKRGLQQHKTMAHRKMPIPELKCSVCNVQFENLDAVVRHAAADGCDPKLRSCPQCGETFLTDEQLDTHVDSAHVKQVYKCDDCDKSFATKSSLGTHVDRVHLKIKPKKTGFYKYHMYPKKMQVKRVEEICEICGKGYPSSTWLKYHQRTHTGERPYKCPECPKSYMTPAALQSHSVSHTGVRRWQCSQCPKTFLHQSSIYKHKLVHTGEKPFTCHICSKTFTQSGSLATHVKYVHMKLKPPPRRRHQPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657523;
- 90% Identity
- -
- 80% Identity
- -