Ccan034602.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637496.1:8771005-8777159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.14 11 7.8 0.6 2 23 2 24 1 24 0.95 2 27 0.16 12 7.7 0.5 2 23 70 92 69 92 0.91 3 27 1.1 81 5.1 1.5 3 23 163 183 161 183 0.95 4 27 2.6e-05 0.002 19.6 1.0 1 23 187 210 187 210 0.96 5 27 0.86 66 5.4 1.3 3 21 217 235 216 236 0.94 6 27 0.37 29 6.5 1.6 3 23 245 266 243 266 0.93 7 27 0.00053 0.041 15.5 0.9 1 23 273 296 273 296 0.95 8 27 0.065 5 8.9 1.7 1 23 301 323 301 323 0.96 9 27 2e-05 0.0015 20.0 0.4 1 20 329 348 329 351 0.94 10 27 0.0047 0.36 12.5 1.1 1 23 357 380 357 380 0.95 11 27 1.6 1.2e+02 4.6 0.7 2 23 444 466 443 466 0.90 12 27 1 78 5.2 1.4 3 23 537 557 536 557 0.97 13 27 0.00049 0.038 15.6 2.1 1 21 561 581 561 582 0.96 14 27 1.7 1.3e+02 4.4 0.4 2 19 590 607 590 610 0.91 15 27 0.2 15 7.4 3.4 1 23 617 640 617 640 0.94 16 27 0.0019 0.15 13.7 2.2 1 23 647 670 647 670 0.96 17 27 9.1e-06 0.0007 21.0 0.5 2 23 676 697 675 697 0.94 18 27 7.1 5.5e+02 2.5 0.1 3 20 734 751 732 753 0.91 19 27 1.3 1e+02 4.8 0.1 3 23 783 804 783 804 0.91 20 27 1.7 1.3e+02 4.5 0.7 3 20 829 846 827 849 0.89 21 27 0.5 38 6.1 2.8 2 21 854 873 853 876 0.93 22 27 1 80 5.1 0.3 1 21 880 900 880 901 0.93 23 27 0.012 0.94 11.2 1.6 1 23 908 931 908 931 0.93 24 27 2.2e-05 0.0017 19.8 1.5 1 23 938 961 938 961 0.97 25 27 7.3 5.6e+02 2.4 1.5 1 23 966 988 966 988 0.93 26 27 4.3e-05 0.0034 18.9 1.1 1 20 994 1013 994 1016 0.95 27 27 0.00069 0.054 15.1 1.7 1 23 1022 1044 1022 1045 0.92
Sequence Information
- Coding Sequence
- ATGGTTTGCGTGTATTGTTGTGAAACCTATGAGGATCCACGCCAATATAGAGAGCACATGAAAGTTGAACACAAAATATTCAAAGTCAACATGGCATTCCTACATTGCTACGAAGACAATGATGCCTATCTCAACGCCAAACGGAACGCCGAGATTATCGTGAAATATTCGACAGCGTACCCATTCAGGCTTCCCGAGAGTTCCATGGTCTGTGTTTACTGCTGTGAGAGTTTCGATGACCCCACTCTGTACAGAAAACATATGGACGGTGATCATCAAACATTCAAAGTGCGCACGGCTTTCGTTCACTGCAGCGAAGGTTTTATTAAAGCTGACTGCACAGAACTACGTTGTCGActctgtgctgcacacctcgaCAACTTAGAAGCAGCCGCTAGTCATTTACACTTAGAACACGACAAGAAATTAAGTCTAAACTTTGAATTAGGCATCCAGCCATTTAAACTTGAAAAAGATAAACTTGCATGCGCGATATGTAACACCAAATTTCCTTGCATACGGCAACTCAGTCGGCATACGCAATCCCATTTCTTGAAGTACACCTGTGATACTTGTGGAAAATCTTATGCCACAATAACCACTTTGAAGAACCATATTAGAttttcacacgccgggaacgaacGGATATGTAGAAAGTGTAGAATGACATTTTCTACTTTAGAAGCAAAACGCGAGCACTTAAGGCATTCCGCTAAATGCTGGTCCCATTTGTGCATGTTTTGTGGAGAACGGTTCATGACATGGACCTTAAAACAAAGCCATTTAAATCAAGTCCACGCAGCTCCTAAGAAGTCCCATCCCTGCCCCGAATGTGGCGAAGTTTTCTCAGAGAGAAAGAAATATCGTGTTCATTTCAAAATATCTCACACTGACGACAATTTCACATGCACTTGTTGCGGTTTAAAATTCGATACGAAACGCGGCCTAGAAGAGCACAGAGTAGTGCACACAAAGGAAAAGTTATTCCCTTGCACTGTTTGCTCAAAATCTTTTCCCAGGAAAAAGAACTTAGCTCAACATATGTGGATACATAGCGAGTACAAGAGATTCGAGTGTGGTCCCTGTAATAAGCAGTTTAATCAGAGAGTCAGTTGGCGTACGCATATGAAATCCTATCATCCTGATTTAGTTGAATTAGAGGGGAAAGCGAACGTTCACGGTGATAGACTTAAAGTAAGGTCCATATCATTACTGACCGATATTAAAGACAAAAAATCAGTCTCCAATGCTACCATCGAGAGACGAAACGCCGAGATTATCGTACAATATGCGACCGCGTTCCCCTTCCGGCTCCCAGAGAAGCTTTTGGTGTGCGTGTATTGCTGCGAGAAGTTTGAAGATCCCTTACTCTTCAGAAAGCATATGGATGACGAACATCAGCAGTTCAAAGTCCACATGGCGTTCGTTCATGTTTCCGATGGTGATCTAAAGGTCGACTGCACCGATCTACGGTGCAGGATATGTTCTGACCAGTTTAAAAAACTAGAAGATGTAGCCGAACATCTATTTAAAGTACACGATTACCCGTTAGATCTCAACTACTATTTGGGCCTACAACCATTCACCATATTCAAGGACTTGTGGCTTTGCGCAGTGTGCGGAGTCAAGTTCCCTTGCTTACGGACGTTAAGCAAACATACCCAAACACACTTTGTCAAATTCACATGCGAGACTTGCGGCAAATCCTATTCTACAACCACGTCTTTACACTCGCATCTCAAATTTTGTAACAAGTCTAACGGTCCGGTTTGCAGGAAATGTCTGAAAGTATTTCCAAGTTTAGAGGCCAGGAAAAAACATTTCGAGAAAGAACCAAGATGCCGTCAACATACATGTAACGTTTGCTTTGAAAGATTCCATACTTGGAATTTAAAGCAACAGCACATGCTCGATGTGCACGGGAAACAAAAGAAAGAGCATCGTTGTCCGGAATGCAAGCTCACTTTTTCTTCCCGGCCGTCTTTCGCTCAACACTTCAAAATAAACCACACTGACAATTACGTTCAATGTACTTACTGCGATAGGAAATTTGATACAGAATATAACTTAAAGCGACATATCGTTGGACATACAGAAACCCCAGAAATCAGTCGGTTTCGAATGGCGAAACGAAATGCGGAGGTTATCTTGCAATATTCGACTGTGTATCCATTCAGACTGCGCTCCAAGTCGCTGTTTTGCTTGTACTGCGATGATGAATTCGAGGACCCGGCGAAGTTCCGCGAGCATGCGCATATATGCCAGCGCTCTTGCACCGTCACTACTTCTTTCGCGTACTCACTCCGCAACCAGGAACACATTAAAGTGGAGTGCTCCAACATCGGATGCCGCATATGCGAAATACCTTTCAACTCCATCGAAGAAATGGTCAAGCATATTTACGATAACCACGAAAATTCCAAACTAAATTTGGAATATGATACCGGTTTGCAGCCTTATAAACTTGATAAAGATAAATGGTTTTGCTTTTTATGTGCCAAGAAATTCCCTTCTCTAACTAAACTCGGCAGGCATACGCCGACTCATTATAGAAAGTGTACTTGTGAAGTTTGCGGGCGTGCCTATCTTACAAAAGAAGCTTTGAAGTACCATGTGAGATGTAGCCATTCGGAAAATTACACATGTCGGAAGTGCTGGCAAGAATTTCCATCGGTACAAGAGAGAAAACTTCATATAAAGAATTCTAAACCCTGCTGGTCTTTCTGTTGCGTGTATTGCGGTGAAAGATTTCAATCGTGGGAGAGCAAACAGAAACATCTATCAGAAGCCCATAATCGTCCAAGAAAGGACTATAATTGCCCTGAATGTGGTAAAACTTTCGAATCCCGAAAATCATTCTATACGCATTACAAAATAGACCATACAGATGAAACCTTTACATGTTCTTGCTGCGGTTTAAAATTTGGAAGCAAGAAGATATTAGAGGATCATAGAATAGGTCATACAGgggaaaaacattttaaatgttCCGTATGCTTTAAAGCCTTCTCGAGAGCTAAGAGTCTGAAACAGCACATGTGGATCCACAGTAACATAAAACGATTTAGTTGCATAGTTTGCGAGAAAACTTTCGCCCAAAAAGTTAGTCTCAAGGGACACATGAAGTCTCATCATCCCGGCTATATCATTAACTACGAATAA
- Protein Sequence
- MVCVYCCETYEDPRQYREHMKVEHKIFKVNMAFLHCYEDNDAYLNAKRNAEIIVKYSTAYPFRLPESSMVCVYCCESFDDPTLYRKHMDGDHQTFKVRTAFVHCSEGFIKADCTELRCRLCAAHLDNLEAAASHLHLEHDKKLSLNFELGIQPFKLEKDKLACAICNTKFPCIRQLSRHTQSHFLKYTCDTCGKSYATITTLKNHIRFSHAGNERICRKCRMTFSTLEAKREHLRHSAKCWSHLCMFCGERFMTWTLKQSHLNQVHAAPKKSHPCPECGEVFSERKKYRVHFKISHTDDNFTCTCCGLKFDTKRGLEEHRVVHTKEKLFPCTVCSKSFPRKKNLAQHMWIHSEYKRFECGPCNKQFNQRVSWRTHMKSYHPDLVELEGKANVHGDRLKVRSISLLTDIKDKKSVSNATIERRNAEIIVQYATAFPFRLPEKLLVCVYCCEKFEDPLLFRKHMDDEHQQFKVHMAFVHVSDGDLKVDCTDLRCRICSDQFKKLEDVAEHLFKVHDYPLDLNYYLGLQPFTIFKDLWLCAVCGVKFPCLRTLSKHTQTHFVKFTCETCGKSYSTTTSLHSHLKFCNKSNGPVCRKCLKVFPSLEARKKHFEKEPRCRQHTCNVCFERFHTWNLKQQHMLDVHGKQKKEHRCPECKLTFSSRPSFAQHFKINHTDNYVQCTYCDRKFDTEYNLKRHIVGHTETPEISRFRMAKRNAEVILQYSTVYPFRLRSKSLFCLYCDDEFEDPAKFREHAHICQRSCTVTTSFAYSLRNQEHIKVECSNIGCRICEIPFNSIEEMVKHIYDNHENSKLNLEYDTGLQPYKLDKDKWFCFLCAKKFPSLTKLGRHTPTHYRKCTCEVCGRAYLTKEALKYHVRCSHSENYTCRKCWQEFPSVQERKLHIKNSKPCWSFCCVYCGERFQSWESKQKHLSEAHNRPRKDYNCPECGKTFESRKSFYTHYKIDHTDETFTCSCCGLKFGSKKILEDHRIGHTGEKHFKCSVCFKAFSRAKSLKQHMWIHSNIKRFSCIVCEKTFAQKVSLKGHMKSHHPGYIINYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -