Ccan034335.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637496.1:5308761-5336590[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.7 4.4e+02 2.8 2.4 1 23 238 261 238 261 0.93 2 19 0.017 1.3 10.8 0.2 1 23 267 290 267 290 0.93 3 19 0.0013 0.1 14.2 2.1 1 23 296 319 296 319 0.97 4 19 6.3 4.8e+02 2.7 3.1 1 23 325 347 325 347 0.95 5 19 0.0013 0.097 14.3 0.3 1 23 371 394 371 394 0.95 6 19 0.037 2.8 9.7 5.1 2 23 430 452 430 452 0.97 7 19 0.00067 0.051 15.2 0.3 2 23 459 480 458 480 0.95 8 19 0.00081 0.063 14.9 0.9 1 23 486 508 486 508 0.98 9 19 0.0046 0.35 12.5 0.2 3 23 566 587 565 587 0.94 10 19 0.0026 0.2 13.3 2.1 1 23 593 615 593 615 0.97 11 19 0.00023 0.018 16.6 3.5 1 23 621 643 621 643 0.98 12 19 6.5e-06 0.0005 21.5 2.1 1 23 649 672 649 672 0.96 13 19 0.00028 0.021 16.4 2.0 1 23 701 724 701 724 0.95 14 19 0.0015 0.12 14.0 2.1 2 23 760 782 760 782 0.94 15 19 0.0032 0.24 13.0 4.4 1 23 810 833 810 833 0.91 16 19 5.6e-05 0.0044 18.5 3.3 2 23 869 890 869 891 0.95 17 19 0.001 0.077 14.6 0.7 1 23 897 919 897 919 0.98 18 19 8.5e-06 0.00066 21.1 1.2 1 23 925 947 925 947 0.98 19 19 0.0009 0.07 14.7 0.3 1 23 953 976 953 976 0.97
Sequence Information
- Coding Sequence
- ATGTCGACGGCAATGTGGAAATTGGAAAAGGATTTGTGCCGATGCTGCCACGCTGAGGGCTCCTTTAAACATTTATCCGATCCCTGCTTCCAATTGGGCCAGGAGGAAGTCTATTCGGATATGTTGCAAGATAGTTTAGACATTAAGATTGTCCCCATAACGGGGGTTCTAAGCGATGTCACATACACAATATGCGATTCATGCGTGGTGCGGCTCCGTGACGCCTCCAACTTTAAGCGGCAAGTCCTGGACTGCGAGGAGCGCTTTAAGGACATGTACAGCAAAAATCTCATCAAGTGTGCCGGCAGTGTGTCACCAGATTATGAAGTCAAAGAAGAACCTATGGCTTCGGATTCAGAtggAGACATGAAGCAGGAATACCAGAGCATAGAAGACGAAGATGACGACGATGCGTTCATGAAGTTTGATGatgAAGATTCCCTAGACTTAGAAGAACGCCAAGAGTTGATCACTATAGAGATCAAGAGCGAGCCGAAAGGCAAAGGCAAGGGCAAAGCCAAGCCCAAGCCTAAGCCCAAAAAGGAGACGCCCATCAAAAAAGCCAAGACCATTAAGGAGAAGCCTATCAAGTTGGAGACAGAGGAGTTGACAGAAGCGGCAGTGAGCGGAGAGAAGAAGAAAGGCGTCATGGCGCCGCGCGCGCCAAAGTTCCGCCTACGCGATGACGACTATAAGAAGGAAGGTGACGCTTACCTCTGCGCTCGCTGCGACAAGCGATACTACAAAATATTCTCGCTCCGCTTCCACGTTAAAACGAAACACTACAAGATACCCCGCTACATTTGCCAGTACTGCTCCAAAGAGTTCATGACTCTAGCCCCACTGACCGTCCACAAACTAGAAGAGCACAATGTAGACGATCGATTCAAGTGCAACGCTTGCAAAGGCACTTTCAACACGAAAATACAGCTCCGAAAACACATCAACAACTTCCATATGCTAGGAGAGAAATACAAATGCGAATTTTGCGAATACGAATCGTTCAGTTTCGAAGGTCTGTACAAGCACAAGTTCAAGCATAGGACTGTGAAAGACTACCACTGGAGGCAACCTCGAGCCAAATATTACACGGTAACAACAGACAAGAAGTACGCATGCAACGAATGCGAGAAATCATTCCCCTCACAACCGCTCGTCTCGCAACACTACCGTTTCGTGCACCTCAAAAAACGCCCAAGAGAACGAAAATGTCCACATTGCGACGACAAAGTCCCCGGTTATTTAAGAGCGTACCATTTAGAGGAAGCTCATGGAATCCCAGCACCGACGTGCGGCGTTTGCAATAAGAAATTCCGCTTTCCTTGCCATGTGCTGCAACATCAAAAGAAAGTGCACATGGGGGAAAAGACTGTCGTTTGTAAAGTGTGCTCGAAAAGTTTTTTTAACAATCTAAGTCTAAGATTACATATGGCAGCACATTCTAGCGTGAAGAAGTATAAATGCGAACAGTGTAACAGAGAGTTTAGGTGGGAGAACAATTTGAAAGACCACTTGAAGATTCACACTGGGGACAAGAGTGGCTTCAAGTTACGCAAGCTCTTCAGCCAGCACTACAGACATGTGCACCTCAAGTTGCGTCCCAAACTTCGCTCTTGCTATCTCTGCAACATTAAAGTCCCCGCACACCTGAGAGCCTTCCATCTTGAGACCGTTCACGGTTGGCCAGCGCCCTCGTGCGGTGCATGCGGGAAAAAATTCGCGTACCCCTTCCAAGTATTGCGCCACCAGAAAATATACCATATGGGAGAGAAATCGTACACCTGCGAAACGTGCAACATGAAGTTCTCATCAAAGTACAGGTTGGAAATGCACTCGATCAAGCATACGGATTTGCGCAAACACAAGTGTACATTTTGTGGGAAATCGTTTAGATGGAAGAATAACTTGAAGACTCATGTGATGATACATCTTGATGAAAAGTCGCATGTGTGTCCGCATTGCGGCGAGGCGTTTGTTCAGCAGAGCAGTCTGAAGTATCACTTGCTGAAAAAGCACCCTGGAAAACCCCCAGGATCAAAGCCTAAAACAGCCGTGGCAGAATACTGCGACGTAAAAGACAAGGAAGATGGTACAAAATCGTACGCTTGCAATATCTGCGACCACGAATTCAAGCAGTGGGGGCACTGGACGCAACACTACAACCAGGTCCACCTGAAGTTAAGAAAGAAGACGCATCCTTGCGTCATTTGTAACGAGGAACTGGTGCCCAGGCACCGATGGAGGCACATGGAGGAACGACACGGCTGGTCGGCCCCGACATGTGGCGCTTGCGGCAAAAAGTTTTCCTACCCTCACCAAGTGACGAAACACCAGAAGCTATTCCATATGGGAGAGAAAAATCATACGTGGGAATCCAGCGATTACCTAAAGTACTGCACCGTATACGAAGAAGACGACTCAACTGTCTACTCTTGCAACATTTGCGAAAAGACATTCAAGAAAAGAGATTTCTTCCGACAACACTACGTGCACGTACACCTAAAAATGAGGAAAAGGACATATTCCTGCGTTATATGCAGTGAGGAACTGGTGCCTTGGCTGAGGGCCAAGCATATGGAAGAAATGCACGGCTGGGAGGCCCCTACGTGCGATGAGTGCGGGAAAAAATTCTCCTTCCAAAACAAATTGATAAAACACCAAAAAGCTCACCATATGGGCGTAAAGAATTTTCAATGTGACAAGTGCGTAATGGCTTTCGCTGATGCCGTTGGATTGAGGAGGCATTATCACAAGCATTCTAATGTTAGGAACTATACATGCGTGTTGTGTTCGAAGGCTTTCAAGACACAGAAGTATTTGGCTACTCACATGAAGATACACCTGAACGATAAAAGATACGTTTGCAAAATCTGCGACGACGCGTTTGTACAGTATGCCAGTTTGAAATACCATATGGCGAAGAGACATGCCAATACCTAA
- Protein Sequence
- MSTAMWKLEKDLCRCCHAEGSFKHLSDPCFQLGQEEVYSDMLQDSLDIKIVPITGVLSDVTYTICDSCVVRLRDASNFKRQVLDCEERFKDMYSKNLIKCAGSVSPDYEVKEEPMASDSDGDMKQEYQSIEDEDDDDAFMKFDDEDSLDLEERQELITIEIKSEPKGKGKGKAKPKPKPKKETPIKKAKTIKEKPIKLETEELTEAAVSGEKKKGVMAPRAPKFRLRDDDYKKEGDAYLCARCDKRYYKIFSLRFHVKTKHYKIPRYICQYCSKEFMTLAPLTVHKLEEHNVDDRFKCNACKGTFNTKIQLRKHINNFHMLGEKYKCEFCEYESFSFEGLYKHKFKHRTVKDYHWRQPRAKYYTVTTDKKYACNECEKSFPSQPLVSQHYRFVHLKKRPRERKCPHCDDKVPGYLRAYHLEEAHGIPAPTCGVCNKKFRFPCHVLQHQKKVHMGEKTVVCKVCSKSFFNNLSLRLHMAAHSSVKKYKCEQCNREFRWENNLKDHLKIHTGDKSGFKLRKLFSQHYRHVHLKLRPKLRSCYLCNIKVPAHLRAFHLETVHGWPAPSCGACGKKFAYPFQVLRHQKIYHMGEKSYTCETCNMKFSSKYRLEMHSIKHTDLRKHKCTFCGKSFRWKNNLKTHVMIHLDEKSHVCPHCGEAFVQQSSLKYHLLKKHPGKPPGSKPKTAVAEYCDVKDKEDGTKSYACNICDHEFKQWGHWTQHYNQVHLKLRKKTHPCVICNEELVPRHRWRHMEERHGWSAPTCGACGKKFSYPHQVTKHQKLFHMGEKNHTWESSDYLKYCTVYEEDDSTVYSCNICEKTFKKRDFFRQHYVHVHLKMRKRTYSCVICSEELVPWLRAKHMEEMHGWEAPTCDECGKKFSFQNKLIKHQKAHHMGVKNFQCDKCVMAFADAVGLRRHYHKHSNVRNYTCVLCSKAFKTQKYLATHMKIHLNDKRYVCKICDDAFVQYASLKYHMAKRHANT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -