Basic Information

Insect: Cenopis cana
Gene Symbol: -
Assembly: GCA_951800055.1
Location: OX637496.1:5960603-5976642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00055 0.043 15.4 0.2 1 23 174 196 174 196 0.99

2 11 8.1e-05 0.0063 18.0 0.1 1 23 232 254 232 254 0.99

3 11 0.0028 0.22 13.2 2.1 1 23 268 290 268 290 0.98

4 11 1.2e-05 0.00092 20.6 2.5 3 23 298 318 296 318 0.98

5 11 2.7e-06 0.00021 22.7 2.9 1 23 324 346 324 346 0.98

6 11 0.00048 0.037 15.6 3.6 1 23 352 374 352 374 0.97

7 11 8.2e-06 0.00063 21.2 3.6 1 23 380 402 380 402 0.99

8 11 1.3e-06 0.0001 23.7 1.9 1 23 408 430 408 430 0.99

9 11 0.0002 0.015 16.8 4.3 1 23 436 458 436 458 0.96

10 11 0.00034 0.026 16.1 0.3 3 23 466 486 464 486 0.98

11 11 0.00024 0.019 16.5 1.6 1 23 492 514 492 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00055	0.043	15.4	0.2	1	23	174	196	174	196	0.99
2	11	8.1e-05	0.0063	18.0	0.1	1	23	232	254	232	254	0.99
3	11	0.0028	0.22	13.2	2.1	1	23	268	290	268	290	0.98
4	11	1.2e-05	0.00092	20.6	2.5	3	23	298	318	296	318	0.98
5	11	2.7e-06	0.00021	22.7	2.9	1	23	324	346	324	346	0.98
6	11	0.00048	0.037	15.6	3.6	1	23	352	374	352	374	0.97
7	11	8.2e-06	0.00063	21.2	3.6	1	23	380	402	380	402	0.99
8	11	1.3e-06	0.0001	23.7	1.9	1	23	408	430	408	430	0.99
9	11	0.0002	0.015	16.8	4.3	1	23	436	458	436	458	0.96
10	11	0.00034	0.026	16.1	0.3	3	23	466	486	464	486	0.98
11	11	0.00024	0.019	16.5	1.6	1	23	492	514	492	514	0.98

Sequence Information

Coding Sequence: ATGGACGTGGCGCACTCGTGCCGCTGCTGCCTGCGGCGCGCTCCGGACAAGGACCTGACGACGCCGTACATGTATCTCGGCAACACGGAAATATATTCGGACATGCTCAGAGACTGCTTCAATTTCAATTTGGTACTTGGAGGTGACGGTCAATGTGGTATCTGTGAGGTGTGCGTGGGCCGTCTGCGAGATGCAAGTGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGAAGTGCTGCAAGCGCAGTGGCAGGGAGGCTTGCTTGTTAAAGAGGAACCAAGAATCAAGTCGGAGATTATTGAAGATGAAGACTCAACTGAGGGGACCGAGATTGTTAAGTACCATGAAATAACCATAGAAAAGTTGGAGATTCAAAAAGGAGACGAGATAGGCGAACCAGCATCACACGGAGATGTTCTAGTGAAGATGGAGAAGCTAGATGAAGATGACATCATGACAGATGATGACTCGCCCGTTGAATCGGCCGCATCCTACCGAACTCTCGTCAAGAAAGAATCGTACACGTGCGATACTTGCGCGGACCAGTTCACAGACAAGCCCAACTTAATCAACCACATACAGACACACAACACACAGACAGACCAATCTATAACATATTCTTGCCAAATTTGTTCTGAACAGTTCACTTGTAAAGAAATCTTTGTTGATCATATCCATAGTCATTCAAGTACATACTCTTGCGAAATATGTAGCATGGGATTCGCGGAAAAATCTCTTTTAGACGAACATATCAGGACACATGCACAGGACGCTGTGAAGAAACGTAAACGCATCAAAATATACATGTGTGATGTATGCAACAAACAATGTCTAAGGAAAACTCAGTTAGACATACATATGAGAGTACATACAGGGGAGAGACCTTTCGGCTGCGATGAATGTGACAAGCGGTTTAAACAGAAAAACAGCTTGGATAAACATAAAAGAACTCATACTGGTGAAAAACCGCACAGTTGTGACGAGTGTGGTAAGAATTTTAGAGAAAAAAGTGGCTTACAACAACATAAACGAACACACACGGGGCACAAACCATTTAGCTGCGAAGAATGCAACAAGCATTTCTCATCAAAGGGTGCTTTGGATTTACATAAATGTGTACACACCAGGACTAAATCATATACCTGTGAAGAATGTCACAAGCAGTTTACACAAAAGGGCAGTTTAGATAAACATAAAAGGATTCACACAGGTGAGAAACCTTACGTCTGCGAAGAATGTAACAAGCAGTTCAAAGAAAAGTACGACCTAATTAAACATAAAAGAACACACACCGGAGAAAAACCACATGCGTGTGAATTCTGTAACAGACAATTTTCACGAAAAGATCATTTAGATGCTCATAAAAGAATTCACACTGGAGAGAAACCATATGGTTGCGAAATATGTAACAGGCAATTTGCACAAAAAGCTACATTAGATATGCATAGAAGAATTCACACTGGAGAAAAGCCATATAACTGTGACGAATGTGACAGCCAATTTAGGCAAAAAAATACGTTGAATTTGCATAAAAGAATTCACGCTAGAAACAGAAAACGTGCATCTGCGGCATCAAATAGCAATTCTGATATTTCCGATGTAATTTAG
Protein Sequence: MDVAHSCRCCLRRAPDKDLTTPYMYLGNTEIYSDMLRDCFNFNLVLGGDGQCGICEVCVGRLRDASDFKLQVQRSQEVLQAQWQGGLLVKEEPRIKSEIIEDEDSTEGTEIVKYHEITIEKLEIQKGDEIGEPASHGDVLVKMEKLDEDDIMTDDDSPVESAASYRTLVKKESYTCDTCADQFTDKPNLINHIQTHNTQTDQSITYSCQICSEQFTCKEIFVDHIHSHSSTYSCEICSMGFAEKSLLDEHIRTHAQDAVKKRKRIKIYMCDVCNKQCLRKTQLDIHMRVHTGERPFGCDECDKRFKQKNSLDKHKRTHTGEKPHSCDECGKNFREKSGLQQHKRTHTGHKPFSCEECNKHFSSKGALDLHKCVHTRTKSYTCEECHKQFTQKGSLDKHKRIHTGEKPYVCEECNKQFKEKYDLIKHKRTHTGEKPHACEFCNRQFSRKDHLDAHKRIHTGEKPYGCEICNRQFAQKATLDMHRRIHTGEKPYNCDECDSQFRQKNTLNLHKRIHARNRKRASAASNSNSDISDVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -