Ccan034316.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637496.1:5207297-5211821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.3 97 4.9 0.3 1 23 71 94 71 94 0.90 2 17 0.11 8.5 8.2 0.1 2 23 131 153 130 153 0.91 3 17 0.01 0.79 11.4 0.1 2 23 176 197 175 197 0.97 4 17 0.00072 0.055 15.1 0.1 1 23 201 223 201 223 0.98 5 17 0.0012 0.092 14.4 1.9 2 23 229 251 229 251 0.97 6 17 0.0078 0.6 11.8 2.4 2 23 258 280 257 280 0.96 7 17 0.00018 0.014 17.0 0.4 1 23 287 310 287 310 0.98 8 17 0.00068 0.052 15.1 3.0 1 23 316 338 316 338 0.94 9 17 0.094 7.3 8.4 0.1 2 23 455 477 454 477 0.91 10 17 0.059 4.5 9.0 0.1 2 23 500 521 499 521 0.96 11 17 0.00023 0.018 16.6 0.8 1 23 525 547 525 547 0.99 12 17 0.00012 0.009 17.5 0.4 2 23 553 575 552 575 0.97 13 17 0.052 4 9.2 1.6 2 23 583 605 582 605 0.93 14 17 4.9e-05 0.0038 18.7 1.1 2 23 613 635 612 635 0.95 15 17 0.0011 0.083 14.5 2.4 1 20 641 660 641 663 0.91 16 17 5.8e-06 0.00045 21.6 1.1 1 23 669 691 669 691 0.99 17 17 0.00033 0.026 16.1 3.6 1 23 697 720 697 720 0.96
Sequence Information
- Coding Sequence
- ATGCTTGCTCGGAGTGTCGCACCGGGAACTAGAACTATCACAATCGATGCAACTCGTAAAAAAACGGTTGCGATAAAGCTTGCAAGCTCACCGAACGTGTTACAGTTGTCTGATGTTGACCTCGATGAGAGGAAGAAGAATCTTTACAATCTAAGTCAGATTTTACTCAATTCTAATGCGAGTCCAATAAGATCGTACGATGTGCGGGGCTACATGTGCGCTTTCTGCAGCGAGCAATTCCTCGAGCCGTATGATCTAAAAAAACATTCCCTAGAAGAACACAGGGATGACCAACTAATAAGGCGTATGTCGGTCATGTCAGGCTCTActagctggctggctggctgtGTATTCGTCACTAGCGTGGTCAAACTAGACATTACGCTTCTGAACTGCGCTCTGTGCGACACTGATTTTGACTCGCTTCAAGATTTAATGATCCATTTGACAGAGGTCCACAATAAAACACTGTACATGAATATCCGGCATCAGTTGCTGCCTTTTAAGTTCGAAACGCCTGATTTGCGTTGCGCAATTTGCTCAGCGGAGTATGTCAGCTTTAAAATGCTCGTGCGGCATATGAATGTGCACTTCAGTAACTATGTTTGTGATATTTGCAATGCTGCTTTCGCTGTTGAGCGATTACTCAAACGTCATGTTACTAAGCATGacgatgaaaatgaaaaatgttctGAATGCGAGAAAGTCTTTATTAATAGACGCAGGTTGCACGTTCACATTTTGCGTATGCATAAGGAGTTTAAAGGGACTAAATGCCAATACTGTGACGAAAGGTTTCCGCAACATGAGAAGAAAAGGATACACATGATTAAGGAACACGGAGTCACCCCAGGAGTCTTTAAATGCGGGGCATGTGATCGCATTTATGGTAGTCAAAGCGCATTGACGAAACATACGAGGAAAGATCATCTCATGGAGAGGAAACACATATGTCCTTTATGTGGCAAGAAATTTTTCTTCGCGTATCATCTGAAGGTACATTCCTCGATACATACCGGTGACGCTCGAAGAACTAGGATTATCACAATCGATGCGACTAATCAAAGAACAGGTATGATGAAGCTTTCAAGGTCACCGAAAGTTTTGCGATTGGCTGAGGCGAAAAAGAATCTTCACAATCTAGGTCAAATTTTACTCCATTCTAATGCGAGTCCAATAAGATCGCATGACGTGCGGGGCTACATGTGCGCTCTCTGCATCGAGCAGTTCCTTGAACCGCataaactaaaaaaacatttcttaGAAGCGCACAACGATGATAGATTAATAAGGCGTTTGTCAGTCATGTCAGGCTCTCCCCTCAACACCCGCCATGTGGTCAAACTAGACATTACGCTTCTGAACTGCGCTCTGTGCGACACTGATTTTGACTCGCTTCAGGATTTAATGGTCCATTTGACAGAGGTCCACAATAAATCACTATACATGAATGTTCGCAATCAGTTGCTGCCGTTCAAATTCGATACGCCTGAGTTGCGTTGCGCAATCTGCTCAGTTGAGTATGGCAGCTTTAAATTACTCCAGCAACACATGAATGGGCACTTCAGGAACTATGTATGTCATATTTGCAACGCGGGGTTCGTGGTGGAGCGGTTCCTCAAGAACCACATCCGTCGGCATGGCGACGAAAAGGTGAAATGTTCTGAATGCGGGAAAATCTTTATTAATGCACAGAAGATGCGCGAACACACAAGACGCGTACACATGGGCTTAGACAAACGGAACAAGTGCCAATACTGTGACGAAAGGTTTAAAGATTATAGGAAGAAGGTTTACCACATGGTCAAGGAACACGGAATTCCCTCAGTAGTCTGGAAATGTGGGGCGTGTGACCGTACTTTTGCTACTCAAAAATCATTGACGCGACATACGAAGAAAGATCATCTCATGGAGAGGAAACACATATGTTCTTACTGTGACATGAAGTTTTTCAGTTCAAGTGATCTGAAAAATCATTTACCGAAACACACGGGTGTAAAGATGTTCAAATGTGAAATTTGTTCCAAGGAGTATGGTAGGAAGACAACTCTGAGAGAGCATATGCGTATACACACAGAGGACAAGAGATTTGCCTGTGGTCACTGCGGGCTAGCTTTCACACAGAAGTGCACCTTGAAAGGACATTTGCGGTCTAAGCATAATGAAGTCCTTTAA
- Protein Sequence
- MLARSVAPGTRTITIDATRKKTVAIKLASSPNVLQLSDVDLDERKKNLYNLSQILLNSNASPIRSYDVRGYMCAFCSEQFLEPYDLKKHSLEEHRDDQLIRRMSVMSGSTSWLAGCVFVTSVVKLDITLLNCALCDTDFDSLQDLMIHLTEVHNKTLYMNIRHQLLPFKFETPDLRCAICSAEYVSFKMLVRHMNVHFSNYVCDICNAAFAVERLLKRHVTKHDDENEKCSECEKVFINRRRLHVHILRMHKEFKGTKCQYCDERFPQHEKKRIHMIKEHGVTPGVFKCGACDRIYGSQSALTKHTRKDHLMERKHICPLCGKKFFFAYHLKVHSSIHTGDARRTRIITIDATNQRTGMMKLSRSPKVLRLAEAKKNLHNLGQILLHSNASPIRSHDVRGYMCALCIEQFLEPHKLKKHFLEAHNDDRLIRRLSVMSGSPLNTRHVVKLDITLLNCALCDTDFDSLQDLMVHLTEVHNKSLYMNVRNQLLPFKFDTPELRCAICSVEYGSFKLLQQHMNGHFRNYVCHICNAGFVVERFLKNHIRRHGDEKVKCSECGKIFINAQKMREHTRRVHMGLDKRNKCQYCDERFKDYRKKVYHMVKEHGIPSVVWKCGACDRTFATQKSLTRHTKKDHLMERKHICSYCDMKFFSSSDLKNHLPKHTGVKMFKCEICSKEYGRKTTLREHMRIHTEDKRFACGHCGLAFTQKCTLKGHLRSKHNEVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -