Ccan036469.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637498.1:9501781-9527393[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.015 1.1 10.9 7.1 1 23 232 254 232 255 0.95 2 31 0.22 17 7.2 1.5 2 23 263 284 262 284 0.97 3 31 3.6 2.8e+02 3.4 2.4 1 23 288 310 288 310 0.97 4 31 0.011 0.82 11.4 1.5 1 23 315 338 315 338 0.92 5 31 0.051 4 9.2 0.2 2 23 344 366 343 366 0.93 6 31 0.051 4 9.2 0.2 2 23 375 397 374 397 0.93 7 31 0.051 4 9.2 0.2 2 23 406 428 405 428 0.93 8 31 0.051 4 9.2 0.2 2 23 437 459 436 459 0.93 9 31 0.051 4 9.2 0.2 2 23 468 490 467 490 0.93 10 31 0.051 4 9.2 0.2 2 23 499 521 498 521 0.93 11 31 0.051 4 9.2 0.2 2 23 530 552 529 552 0.93 12 31 0.051 4 9.2 0.2 2 23 561 583 560 583 0.93 13 31 0.051 4 9.2 0.2 2 23 592 614 591 614 0.93 14 31 0.063 4.8 9.0 0.2 2 23 623 645 623 645 0.93 15 31 0.051 4 9.2 0.2 2 23 654 676 653 676 0.93 16 31 0.058 4.5 9.1 0.3 2 23 685 707 684 707 0.93 17 31 0.22 17 7.2 0.1 2 20 716 734 715 736 0.89 18 31 0.27 21 7.0 0.1 2 20 747 765 747 767 0.89 19 31 0.063 4.8 9.0 0.2 2 23 778 800 778 800 0.93 20 31 0.051 4 9.2 0.2 2 23 809 831 808 831 0.93 21 31 0.058 4.5 9.1 0.3 2 23 840 862 839 862 0.93 22 31 0.068 5.3 8.8 1.2 3 23 872 893 870 893 0.92 23 31 2 1.6e+02 4.2 0.0 2 22 905 925 904 925 0.91 24 31 0.36 28 6.6 0.5 3 23 938 959 937 959 0.94 25 31 0.0091 0.7 11.6 0.3 2 23 965 987 964 987 0.95 26 31 0.0056 0.43 12.2 3.0 2 23 1010 1031 1009 1031 0.97 27 31 0.21 16 7.3 0.1 1 16 1037 1052 1037 1053 0.87 28 31 0.21 16 7.3 0.1 1 16 1058 1073 1058 1074 0.87 29 31 0.21 16 7.3 0.1 1 16 1079 1094 1079 1095 0.87 30 31 0.21 16 7.3 0.1 1 16 1100 1115 1100 1116 0.87 31 31 0.19 15 7.4 0.0 1 16 1121 1136 1121 1138 0.87
Sequence Information
- Coding Sequence
- ATGAAAGCGGAAAATGGTAGGAAAGCAGAGCTATTGGCGTGCCGGGTCTGTCTGGCGACAGAAGGAAAGTTAGTCAATATTCACGAAAATGGGCTAGACAAATCGTTTCTAGAGCTGCTAGGCACCACGGTGACCTCATCGGATGGCTTCCCTCGGCATATGTGTGTGTTCTGCCGCCGGCTCATGGCCAAGTTTGAAGAGTTCCGAGCTCGCTGCCACCGGACACAAGAGCTGCTGCACCAGCTTCATAAACAAGATACTGTAACAATAACTTCTATAAGCAACATAAACCGCTCCCACATCACATATCTCACACAACATACCAATACAACAATCATCGAATGCGAGCACCAAGAGCCAGTCATCAAGAACGAAGACATTGAGCCTGATGAAGTGGAAATCAAGACCAATGATGAAGTCGTTGTGAAGGAAGAGGACTTAGATGATAATTTGGAGGCGGAGGAGATTGAATATGAGGTGGAGAAGATGCGAAGTAAGAGGAAGAGAAAGGTTCGGAAGGATGCAGGAGAGAAGTTACCTAAAGaaaagAAGATCAAGAAAATGTTCGACTGCGAAGCGGATTTCCCGGCGTTCGAGAGCAAATACAACATGGAGATAGTAGTCTTGACGATGGAACAGCAGTTGGAAAACATGGCGGCGAGGAGAAACTCCTCAAACTACACTAACTCGCCGCATAAATGTCCGCTGTGCTATAAGGGGTTTTCCTCGGAGGCCACTTTTAAGAACCACCACTTGAAACATCACGACCCGAGCGTGGGCTCGCAGCAGTGCTCCTTATGCCACTCCCGGTTCCGGATCCCCGCGTTTCTGCGCACGCACGCCGAGACACACCGGCTCAAGTTCGTGTGCAGACAGTGCCGCTTCGTGGCCAGCAACAGGTACCACGCCATAACTCATTTCCGAGAGCATAGCGGTTTCAAATACGTCTGCAAGTACTGCGGGGCGACTTTCAAGAAACCGTCGACGCACGGCACGCACGTGCGCATCCAGCATCCCACCGAGAACACATCTTGCGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACGCATCTTGCGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCTTGCGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCAGCCAGAAACAAATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCAAAAACAGCATCCCACCAAGAACGCATCTTGCGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCAAAAACAGCATCCCACCAAGAACGCATCTTGCGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCAAGAACACATCTTGCGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCAGCCAGAAACAAATCCTGTGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGATGCACAAGACCCGAGCGCACAAACAGCATCCCACCGAGAACACATGCTGCGACATCTGCGGGGAGACCTTCCAGGGGGAGTTCGGTCTGAGGACGCACAAGACCCGAGCGCACAAACAGATCTCTGACAGTGAGTCCGGCCCTCTAAGCTGCGGCGCCTGTGGCGTGCAGTTCGCAAGCTCGTACGCGCGCGCGCGACACACCAACACCGCCGCCGACAACGTCTGCAACCCGACCATGAGGGCGTGTACTCTGTGCGGGGAAAACCTGGCGACGGACGAGCTACTGAGACACCACACCCAGGAACGGCACAGCAAACCGGAGACCAAGTGTGACGAgTGCAACAAGTCGTTCCTAACCGAGGCTTCTCTGAGCGTGCACTACGAGCGAGTGCATCTGCAGGTGAAGAATGTGAGACGAAAGGCGTCGCACCACGCGCGCAAACAATACGGCGGCGTCGTCATGTGCGAGCTCTGCGGGAAGCGGTGTAAGAACAGTACGATCCTGAAGTACCACCAACGTACTCACACCGGTGAGAAACCTCACCCCTGCCCGCGCTGCCCCAAGCGGTTCGTCTCGCCCATGCTGCTCCACGGACTGAAACCTCACCCCTGCCCGCGCTGCCCCAAGCGGTTCGTCTCGCCCATGCTGCTCCACGGACTGAAACCTCACCCCTGCCCGCGCTGCCCCAAGCGGTTCGTCTCGCCCATGCTGCTCCACGGACTGAAACCTCACCCCTGCCCGCGCTGCCCCAAGCGGTTCGTCTCGCCCATGCTGCTCCACGGACTGAAACCTCACCCCTGCCCGCGCTGCCCCAAGCGGTTCGTCTCGCCCATGCTGCTCTACGTAAGTCAACCTTAA
- Protein Sequence
- MKAENGRKAELLACRVCLATEGKLVNIHENGLDKSFLELLGTTVTSSDGFPRHMCVFCRRLMAKFEEFRARCHRTQELLHQLHKQDTVTITSISNINRSHITYLTQHTNTTIIECEHQEPVIKNEDIEPDEVEIKTNDEVVVKEEDLDDNLEAEEIEYEVEKMRSKRKRKVRKDAGEKLPKEKKIKKMFDCEADFPAFESKYNMEIVVLTMEQQLENMAARRNSSNYTNSPHKCPLCYKGFSSEATFKNHHLKHHDPSVGSQQCSLCHSRFRIPAFLRTHAETHRLKFVCRQCRFVASNRYHAITHFREHSGFKYVCKYCGATFKKPSTHGTHVRIQHPTENTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPTKNASCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPARNKSCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAQKQHPTKNASCDICGETFQGEFGLRMHKTRAQKQHPTKNASCDICGETFQGEFGLRMHKTRAHKQHPTKNTSCDICGETFQGEFGLRMHKTRAHKQHPARNKSCDICGETFQGEFGLRMHKTRAHKQHPTENTCCDICGETFQGEFGLRTHKTRAHKQISDSESGPLSCGACGVQFASSYARARHTNTAADNVCNPTMRACTLCGENLATDELLRHHTQERHSKPETKCDECNKSFLTEASLSVHYERVHLQVKNVRRKASHHARKQYGGVVMCELCGKRCKNSTILKYHQRTHTGEKPHPCPRCPKRFVSPMLLHGLKPHPCPRCPKRFVSPMLLHGLKPHPCPRCPKRFVSPMLLHGLKPHPCPRCPKRFVSPMLLHGLKPHPCPRCPKRFVSPMLLYVSQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -