Ccan017020.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cenopis cana
Gene Symbol
-
Assembly
GCA_951800055.1
Location
OX637480.1:1536363-1548315[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.7e-05 0.0028 19.1 0.1 3 23 312 332 310 332 0.97
2 15 0.00074 0.057 15.0 0.5 1 23 338 360 338 360 0.97
3 15 0.00074 0.057 15.0 0.5 1 23 378 400 378 400 0.97
4 15 0.00074 0.057 15.0 0.5 1 23 418 440 418 440 0.97
5 15 0.00074 0.057 15.0 0.5 1 23 458 480 458 480 0.97
6 15 0.00074 0.057 15.0 0.5 1 23 498 520 498 520 0.97
7 15 0.00074 0.057 15.0 0.5 1 23 538 560 538 560 0.97
8 15 0.00074 0.057 15.0 0.5 1 23 578 600 578 600 0.97
9 15 0.00074 0.057 15.0 0.5 1 23 618 640 618 640 0.97
10 15 0.00074 0.057 15.0 0.5 1 23 658 680 658 680 0.97
11 15 0.00074 0.057 15.0 0.5 1 23 698 720 698 720 0.97
12 15 0.0088 0.68 11.6 0.2 1 21 738 758 738 759 0.95
13 15 5e-05 0.0039 18.7 3.0 1 23 770 792 770 792 0.98
14 15 0.00087 0.067 14.8 3.0 1 23 803 825 803 825 0.98
15 15 0.00063 0.048 15.2 1.9 1 23 830 853 830 853 0.96

Sequence Information

Coding Sequence
ATGCCATTCCAACAGGAGCTTCGCTCGATGCAGCCCGAAGAACTGAGCTCACTAATAACATCAGTGCTTGTGAAGCTCGGCATTCTGTCGCAGCGGGGCTCCTGCCTCGCGGTGCAGCGAGCCGACGTGTCGAGGCTGCAGTTCGAGGCGGGCGGGGCGGTGCTGAGGATGGAGCTGGTGGAAGAGCGGAGCTCCTGCCTCGCGGTGCAGCGAACCGACGTGTCGAGGCTGCAGTTCGAGGCGGGCGGGGCGGTGCTGAGGATGGAGCTGGTGGAAGAGCTGGAGAGCTCTCTAATAACATCAGTGTTCGTGAAGCTCGGCATTCTGTCGCAGCGGGGCTCGTGCCTCGCGGTGCAGCGAGCCGACGTGTCGAGGCTGCAGTTCGAGGCGGGCGGGGCGGTGCTGAGGATGGAGCTGGTGGAAGAGCTGGAGAGCTCTCTAATAACATCAGTGTTCGTGAAGCTCGGCATTCTGTCGCAGCGGGGCTCGTGCCTCGCGGTGCAGCGAGCCGACGTGTCGAGGCTGCAGTTCGAGGCGGGCGGGGCGGTGCTGAGGATGGAGCTGGTGGAAGAGCTGGAGAGCTCTCTAATAACATCAGTGTTCGTGAAGCTGGGCATTCTGTCGCAGCGGGGCTCCTGCCTCGCGGTGCAGCGAGCCGACGTGTCGAGGCTGCAGTTCGAGGCGGGCGGGGCGGTGCTGAGGATGGAGCTGGTGGAAGAGGATTGcgaggaagaagaagaaagccCAATACCCAAACAAGAGCTGTTTATTGAGGAGGTGGAGGCCTATGTCCCCGCGGAGCCCCCGGAGCCTTCAGAGAGGCCTCCAGAGCCAAGTGTGGAGCAGAAACCCAGTGTTGTGCAGCACAAAGCTACCTTCGTGGAGTCGAAGAAAAAGGCGCCCAAGATACACACAAACGTCGGTGCCATGGCATGCTCCGTCTGCGGTCGCGTGTTGGCGTCCCGCTCCGCCCTGCGCCGTCACGAGCGCACGCACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGGTGCACGAGGGTAAGGACAGCTGTGCTAGTGTCGAGACACACTCCGGCGAGCGACCGTACGCCTGCCCGCGGTGCTCGCGAGCGTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTGCTTAACCTACTATTGTTGACAGCGGTGCGTCCCCACAAATGCTCGACGTGCAACAAGAGTTTCACGCAACGCAACGCTCTAGCTTTGCACGAGCGCTCGCACCTGCCGCCGCACGAGCGAGCGCTGGCCCTGCACAGCTGCCCGCACTGCCCCAAGCTGTTCCTTTATTCTTCAGgTCTGTCCCGGCACATGATGACGCACTCCGGCCGCGTGTACGTGTGCGGCGTGTGCCGGCGACAGTTCACGGACAAGAGCTCCGTGCTGCGCCACCACCGCGCGAGACACTGCGGGCCCGAACCCGAGCCCGAACACGAGCCGAGCAAGCTCGAGGACGAGGTAGTATAG
Protein Sequence
MPFQQELRSMQPEELSSLITSVLVKLGILSQRGSCLAVQRADVSRLQFEAGGAVLRMELVEERSSCLAVQRTDVSRLQFEAGGAVLRMELVEELESSLITSVFVKLGILSQRGSCLAVQRADVSRLQFEAGGAVLRMELVEELESSLITSVFVKLGILSQRGSCLAVQRADVSRLQFEAGGAVLRMELVEELESSLITSVFVKLGILSQRGSCLAVQRADVSRLQFEAGGAVLRMELVEEDCEEEEESPIPKQELFIEEVEAYVPAEPPEPSERPPEPSVEQKPSVVQHKATFVESKKKAPKIHTNVGAMACSVCGRVLASRSALRRHERTHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLVHEGKDSCASVETHSGERPYACPRCSRAFAQKEVMHRHMLLNLLLLTAVRPHKCSTCNKSFTQRNALALHERSHLPPHERALALHSCPHCPKLFLYSSGLSRHMMTHSGRVYVCGVCRRQFTDKSSVLRHHRARHCGPEPEPEHEPSKLEDEVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-