Basic Information

Insect: Cenopis cana
Gene Symbol: -
Assembly: GCA_951800055.1
Location: OX637496.1:6024176-6045200[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.071 5.5 8.8 0.1 1 20 170 189 170 191 0.94

2 15 0.00015 0.012 17.2 2.2 1 23 216 239 216 239 0.93

3 15 0.43 33 6.3 1.1 1 23 264 286 264 286 0.91

4 15 1.2e-05 0.00089 20.7 4.0 2 23 297 318 296 318 0.97

5 15 0.00089 0.069 14.8 1.3 1 23 324 346 324 346 0.97

6 15 4e-06 0.00031 22.1 5.0 1 23 352 374 352 374 0.98

7 15 2.2e-06 0.00017 23.0 2.8 1 23 382 404 382 404 0.97

8 15 8.9e-06 0.00069 21.0 1.7 1 23 410 432 410 432 0.98

9 15 1.5e-05 0.0012 20.3 1.9 1 23 438 460 438 460 0.98

10 15 6.9e-07 5.3e-05 24.6 3.1 1 23 475 497 475 497 0.97

11 15 3.2e-06 0.00025 22.5 1.1 1 23 503 525 503 525 0.97

12 15 0.0012 0.093 14.3 1.8 1 23 531 553 531 553 0.97

13 15 8.1e-05 0.0063 18.0 3.8 1 23 559 582 559 582 0.96

14 15 9.8e-05 0.0075 17.8 3.6 1 23 588 610 588 610 0.96

15 15 1e-06 8e-05 24.0 1.3 1 23 616 638 616 638 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.071	5.5	8.8	0.1	1	20	170	189	170	191	0.94
2	15	0.00015	0.012	17.2	2.2	1	23	216	239	216	239	0.93
3	15	0.43	33	6.3	1.1	1	23	264	286	264	286	0.91
4	15	1.2e-05	0.00089	20.7	4.0	2	23	297	318	296	318	0.97
5	15	0.00089	0.069	14.8	1.3	1	23	324	346	324	346	0.97
6	15	4e-06	0.00031	22.1	5.0	1	23	352	374	352	374	0.98
7	15	2.2e-06	0.00017	23.0	2.8	1	23	382	404	382	404	0.97
8	15	8.9e-06	0.00069	21.0	1.7	1	23	410	432	410	432	0.98
9	15	1.5e-05	0.0012	20.3	1.9	1	23	438	460	438	460	0.98
10	15	6.9e-07	5.3e-05	24.6	3.1	1	23	475	497	475	497	0.97
11	15	3.2e-06	0.00025	22.5	1.1	1	23	503	525	503	525	0.97
12	15	0.0012	0.093	14.3	1.8	1	23	531	553	531	553	0.97
13	15	8.1e-05	0.0063	18.0	3.8	1	23	559	582	559	582	0.96
14	15	9.8e-05	0.0075	17.8	3.6	1	23	588	610	588	610	0.96
15	15	1e-06	8e-05	24.0	1.3	1	23	616	638	616	638	0.98

Sequence Information

Coding Sequence: ATGCAGGCGCTGCAATCGTGTCGCTGTTGCCTGAGGCGCCCTCCAGACAAGGGTCTCAAGACGCTATACGAAAATGTCGGCAAAACGGAGAATTATTGGGACATGCTTAAAGAGTGCTTCAATATTcatTTGAATGTTGGGAATGATGAGTGTGGAATCTGCGAGGTGTGTGTGGCCCGCCTCCGAGATGCCACAGAGTTCAAGATGCAAGTTCAGCAGAGCCAGGTGGAGCTTAAAGCACTGCTGGAGAGAGCTCTACAAGAAAAAGATAAaaaacctaatttaataaaggtTGAGCTTGCTGAGGAAGATCCCAATGTTGAAGAGGTTATGATACaGGATGATGGTCCAGTGAAATCAGAGTTGGGCGATGGAGACATAGTATCCACCGATTTGTTTGATGAAGACCCAGTCGACGCGGCATCAGATAAGTCGGAATCTGAAGACGAACCGCAATTTAAATGTCAGAAAACATTCGGAGATGAAGACAGTCCCCCTAAGAATAAATATGCGTGCGGTTACTGCCATGACGAATTTGATCAAAAAACTGACTTAATAGAACATTTAGAGGAATGTTCCGAGCTATTGTTCAGCGCAACAGATGTCTCTGCTCTAAAACCGATAGAGACAGACGGAATGCCGCCCTACAATTGCCGCAAGTGTCACAAAGAATTCGACCAAGAGGAAAGCCTCACCAGGCACATGTTTGCCATCCACGCCAAACACGAACTTCAATCCAAAGTCGAAGTAAATGAAGACCCAATTGAAGCGCCcaccaagaaaaaaatacatccCTGCGAAGTCTGCTGTCAATGGTTCACATTAAAAGCAGACCTAGAAAAGCATATGGAAGTTCACAAGGTGATTCCCAATGAAAACGACGATTTAACCTGTGAGACTTGCCAAAGACAATTTTCGGATAGATCACATCTGAACAGACATCAGCAATCGCACGGGTCAAGGGACAACTACAATTGCGATTTGTgcgaaaaacaatttaaaagttACAACGGTTTGAAAATGCATAAGATGGTTCACACTGGTGAGAAGCCGTATCAATGTCAAGTGTGCCAGAAGCAGTTTAGGCATAAGAGTCACTTGACTGCACATCAAGAGATTCATATGGAGAACAGGCAGTATAAGTTCTTCTGTTCGGTGTGCAAGAAGAAATTCGCGCAAAAATCCTCTTTAAAGCTTCATATGAGATTACATACAGGAGAGAAACCTTACACCTGTGAAATCTGTAACAAACCCTTCGCTTTTAGATCAACTTTAAATTCCCATAGGCGATTCCACACAGGAGAAAAACCATACACGTGTGAAGTGTGCCGAAAGCAATTTACGCTAAAGAGCTCATTGAACAAGCATTTACTGTCTCATGCAGATGTTCTTGATTTACCTGCGTCTGCAACCGATGAATCATTCTGTTGCGAAATATGTGGAAAGCGATTTAGACAAAAAAGCTACTTAGCCAGGCATTTGAAAGCTCATATGGGTATCAAACCGTATTTCTGTGAAATATGCAACAAGCGATTTGGCCAAAAAGGCAACTTGAGAGCTCATAAAAAGATCCACACTGGAGAGAAATCTTTCGCCTGTGAAATATGCCGCAAGCGATTTGGCACGAAAGCCAATTGCAAGAACCACATGATCATACACACTGGGCAGAAACCGCACTCGTGCAAAATATGCAATAagcaattttcatacaaatgcGCCTTGAACGTGCATATCAAAGTGATTCACTTCAGAGAGAAACCACATATATGCCATATATGCAAAAGGTCATTTGCGTTGTTGTCTACACTGAAGAAGCATATATTGAGTCATACTGGTGAGAGGCCGTTTTCATGCCATGTATGTGGCAAGGCGTTCACAGTGAAATATGGATTGAAGAAGCATCTATTAATCCACAACAGGCACCATTAG
Protein Sequence: MQALQSCRCCLRRPPDKGLKTLYENVGKTENYWDMLKECFNIHLNVGNDECGICEVCVARLRDATEFKMQVQQSQVELKALLERALQEKDKKPNLIKVELAEEDPNVEEVMIQDDGPVKSELGDGDIVSTDLFDEDPVDAASDKSESEDEPQFKCQKTFGDEDSPPKNKYACGYCHDEFDQKTDLIEHLEECSELLFSATDVSALKPIETDGMPPYNCRKCHKEFDQEESLTRHMFAIHAKHELQSKVEVNEDPIEAPTKKKIHPCEVCCQWFTLKADLEKHMEVHKVIPNENDDLTCETCQRQFSDRSHLNRHQQSHGSRDNYNCDLCEKQFKSYNGLKMHKMVHTGEKPYQCQVCQKQFRHKSHLTAHQEIHMENRQYKFFCSVCKKKFAQKSSLKLHMRLHTGEKPYTCEICNKPFAFRSTLNSHRRFHTGEKPYTCEVCRKQFTLKSSLNKHLLSHADVLDLPASATDESFCCEICGKRFRQKSYLARHLKAHMGIKPYFCEICNKRFGQKGNLRAHKKIHTGEKSFACEICRKRFGTKANCKNHMIIHTGQKPHSCKICNKQFSYKCALNVHIKVIHFREKPHICHICKRSFALLSTLKKHILSHTGERPFSCHVCGKAFTVKYGLKKHLLIHNRHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -