Ccan036547.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637498.1:10206145-10209489[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5e-06 0.00019 22.8 0.3 3 23 120 140 119 140 0.98 2 13 4.4e-05 0.0034 18.9 4.5 1 23 146 168 146 168 0.98 3 13 0.0014 0.11 14.1 3.1 1 23 174 196 174 196 0.97 4 13 2.3e-05 0.0018 19.8 7.2 1 23 202 224 202 224 0.98 5 13 9.8e-07 7.5e-05 24.1 2.6 1 23 237 259 237 259 0.97 6 13 3.7e-06 0.00029 22.2 0.7 1 23 265 287 265 287 0.96 7 13 0.27 21 6.9 2.1 1 23 293 315 293 315 0.95 8 13 1.2e-05 0.00094 20.6 0.9 1 23 321 343 321 343 0.97 9 13 2.6e-06 0.0002 22.7 0.4 1 23 349 371 349 371 0.98 10 13 0.00011 0.0085 17.6 0.8 1 23 377 399 377 399 0.98 11 13 1.3e-05 0.00097 20.6 1.8 1 23 405 427 405 427 0.97 12 13 3.9e-06 0.0003 22.2 2.9 1 23 433 455 433 455 0.98 13 13 2.4e-06 0.00018 22.9 0.3 1 23 461 483 461 483 0.96
Sequence Information
- Coding Sequence
- ATGGTGCAGTGTGGAGCGGCGGCAGCGGTCTCTATCAAGCAGGAACATGCGGGGGAGGGGGATGAGGCCGGCGCGGGGGAGGGGGGTGTGCTGCAGCCGCGGGACCTGCTGTTTACGGAACATGCATGCATCAAGTTGGAGGCAGAGTTTATGGGCGCGGGGCGAGTGAAGGAGGAGCGAGGCGGAGCGGGCCGGGGGGAGGAGGAGAGAGGCGGCGGGAGCGAGAGCGCACACGCGGGTGAGAGGGACACCGCGCACGCTACGGAAAACGCGCTGTGCGAGGCAGTTCCACTCCCGGCGCgtgcgccccccgcccccgccgcagctgccgcccccgcccccgcgcccgccgccgcgtgCCAGCTGTGCGCGCAGACGTTCAAGCAGGCGAGCAATCTGAAGGCGCACATGCGCATACACACCGGGGAGAGACCCTACCCCTGCCATATGTGCCAGAAGCGCTTCAGGAAACTGAACACCTTGAAGAAACACGAACGAATTCACACCGGCGAGAAACCTCACCAGTGCAGTCTGTGCGCGCGACGGTTCCGGCTGTCGGACACGCTGCGCAAGCACGAGCGGCTGCACACGGGAGAAAAACCGTACTGCTGCAAGATATGTCACAAAAAGTTTACGCAATTGGTCAGTTTAAGGCGACACGAGCGAACTCACCCCGAAGAATTCCCCGACGCCCCCCCGCTCCTCTCCCACCCCTGTCGGGAGTGTGACAAGCGCTTCGAGTCGTCCAGCGACTTGAAGAGACACGAACGAACTCACACAGGCGAAAAACCTTACTTGTGCAATATTTGTAACAAGAGCTTTGCTCAAATGGTGACGTTAAGGCAACACCAGCGAATCCACACCGGAGAAAAACCACACTGTTGTGGAACGTGTATGATGGCGTTCGCAGATCTCAGGACTCTGAAAGACCATGAAAGGATCCACACGGGAGAAAAACCTTACGTCTGCAAAGTCTGTGATACAAGGTTTTCTCGGTTGAACACTTTAAGGAAACATGAACTAATACACACGGGGGAGAAAAAATTTCCATGCAAAATATGCAAAAAGCAATTCAGGCAATCAGGGGCTTTAAACCTGCACGTCCGAATACACACCGGAGAGAAACCTTATTCCTGTGGATCGTGTTACAAGGAGTTTGCGCGACTTGACACTCTGAAGAAACATGAACGCATCCACTCAGGAGAGAAACGGTACTGCTGCAGAGTATGTAGTAAAGAGTTCGCAGATTCCGGCAATTTGAAGAAGCACGAACGCGTCCACACCGGCGATAAACCATACTCGTGCAATACGTGCAATAGGGAGTTTACAGACTTGAGCCATTTGAAGAATCACGAACGAATTCACACTGGGGAGAAACCATACTTGTGCGATATTTGTAATAAAGCGTTTGCAGTATCGAGTACTTTAAAAAAACATCAACAAATTCACTCCGGAGAATCGAGCAGAATATAA
- Protein Sequence
- MVQCGAAAAVSIKQEHAGEGDEAGAGEGGVLQPRDLLFTEHACIKLEAEFMGAGRVKEERGGAGRGEEERGGGSESAHAGERDTAHATENALCEAVPLPARAPPAPAAAAAPAPAPAAACQLCAQTFKQASNLKAHMRIHTGERPYPCHMCQKRFRKLNTLKKHERIHTGEKPHQCSLCARRFRLSDTLRKHERLHTGEKPYCCKICHKKFTQLVSLRRHERTHPEEFPDAPPLLSHPCRECDKRFESSSDLKRHERTHTGEKPYLCNICNKSFAQMVTLRQHQRIHTGEKPHCCGTCMMAFADLRTLKDHERIHTGEKPYVCKVCDTRFSRLNTLRKHELIHTGEKKFPCKICKKQFRQSGALNLHVRIHTGEKPYSCGSCYKEFARLDTLKKHERIHSGEKRYCCRVCSKEFADSGNLKKHERVHTGDKPYSCNTCNREFTDLSHLKNHERIHTGEKPYLCDICNKAFAVSSTLKKHQQIHSGESSRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00654515;
- 90% Identity
- -
- 80% Identity
- -