Ccan012851.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cenopis cana
Gene Symbol
Bcl11a
Assembly
GCA_951800055.1
Location
OX637476.1:19530054-19538050[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.084 6.5 8.5 1.4 1 23 137 159 137 159 0.96
2 18 0.0056 0.43 12.2 0.1 3 19 168 184 166 186 0.90
3 18 0.0003 0.023 16.3 0.9 2 23 198 219 197 219 0.97
4 18 0.00037 0.029 16.0 0.1 3 23 227 247 226 247 0.97
5 18 0.88 68 5.3 4.5 1 15 255 269 255 278 0.73
6 18 7.5e-07 5.8e-05 24.4 2.8 1 23 283 305 283 305 0.97
7 18 8.5e-05 0.0065 18.0 3.8 1 23 312 334 312 334 0.98
8 18 2.8e-05 0.0022 19.5 2.0 3 23 342 362 340 362 0.98
9 18 2.5e-05 0.0019 19.7 2.5 1 23 368 390 368 390 0.98
10 18 9.4e-05 0.0073 17.8 2.0 1 23 454 476 454 476 0.99
11 18 3.4e-05 0.0026 19.2 0.5 2 23 484 506 483 506 0.92
12 18 0.00055 0.042 15.4 3.2 2 23 515 536 514 536 0.97
13 18 4.9e-06 0.00038 21.9 0.7 2 23 543 564 543 564 0.97
14 18 0.015 1.2 10.9 4.8 1 23 571 594 571 594 0.95
15 18 0.00041 0.032 15.8 0.1 1 23 599 621 599 621 0.97
16 18 2e-05 0.0015 20.0 0.2 1 23 628 650 628 650 0.98
17 18 0.37 28 6.5 4.2 1 23 656 678 656 678 0.97
18 18 4.2e-07 3.2e-05 25.2 1.8 1 23 684 706 684 706 0.99

Sequence Information

Coding Sequence
ATGGATAAATGGACTAATAGCTGTCGTGCTTGTCTGTCTACTTCGGAATCTTTTACATAtttcttgtatgaaaatataTCTCACGAAGAATATTGGTTTTGTACTTCTATTGAgTCAGAGAATATATTGTGTAACATTTTGAAGAGCTTAGATGCTGAAAACAAAAGCTGTCTTAATTTAAAATCGGAACTTGAAGATAATGTATTTGAAGAAAAGCTTGAGAATAATACACTGGTGAAGACTGAGAATTTGCATGATatagaggaTTTAGACACTAACATATGTGATGATATTTATGAAGAAGACACAACAACCTACAAACCCATCACAAAGGTGCACAATTCAGAAACTAGGAAAAAATATGCAAAGCCAGTGTTAAAGTTGAAGAAGAGCAGGCGAAAATTCCAATTTACGTGTGAATTATGTTATAAAAAGTTTGGCTATAGAGAACGCTATGAAGCACATAAGTTGGAACATGAGGGAAAAACCACCGCAATATACTGTGCACCGTGCAACAAGACCTTCTCGACCTGGGGCGGGCTGAAACGGCACAACGACTGTGAGCACTCGCGGCTGACGCTCGACCAGCTCACTTGCAAACTGTGCTCCAAGGTGTTCAAAAGCCCGCGGACACTGGGCATTCACCGCAGCACCCACGGAGAGAGGAAGCTGAGGATATGCGACGTTTGCGGGAAGGGGTTTAGAAGTGACCTGACATTGAAGGCTCACCTAGAAACGCATATAGAGAACCGGGAGCGCCGCTACACCTGCCAACATTGCGGCAAAAAGTTCCTCAGCAAAAAAACCTGCGCGTCCCACGCATCCCGACGACACAGCGACCGACGCTTCATCTGCCACCACTGCAACTACCCCTTCACAGACAAGAGCAACCTCGCCAAACACATTTTAATACACGAAGGCAAACAGCCGTTACACAAATGTGACTTGTGTCATAAAACTTTCGCTGCTCAATCTTCCCTTGTCATACACAAAAGGACACATACTGGTGAAAAGCCTTTCGGTTGCAGTTACTGTCCGAAGAGTTTCTCGAATAAACGCATGCTGGTGGACCATCACAGGATACATACTGGGGAGAAGCCGCATAAATGCGCGGTGTGTGAACAGAGCTTTACGCAGCGAGGCACCATGAAGCGACATATGAAGGTACATGATAGAATATATTTGGAAGTTAAAAATGAGACTGGAGAAGATGCTTGGAGTGGGAAGAGTAGAAATGATACAACAGACATAGATGCTCCAAACACAGATTTACAGGATATCAAGGACCATATTGAGGTTACTAATGTGAGaaaaactgaactAAGAAAGTCAACAGTAAGAAATTTCCAGTCCAGAAACTTCAAATGTGAACAGTGCAACAGAAAGTTTTCCTTCAAAGAGCGTTTGGAAGGCCACATGTTAACCCACGAAGGGAAAAAAGCACCGATAGAGTGTAAGGAGTGCAACAAAACATTCACAACCTGGGGAGGTCTGCGCGGACACATCGAGGCGTGCCATTCACCACTCTCCTTTAAGGATGTGACTTGCCAAATCTGCTCCAAAGTGTGCAAGACTACTAACACGTTGAGGGTTCATTTGAAAACCCATAAAGACCGGCGAGAGAGAGTGTGCGACGAGTGTGGGAAAACGTTTAAAAGCAATGTCACATTTAAGAACCACTTAGCGACCCACACCAACCGCTCACGGAACTACCCCTGCACACACTGCGGCAAAACGTACATCAACAAGAAAACCTGCGCTAGTCACATATCCCGTCGCCACGCCAACAAAAGTTTCATATGCGCATACTGCGACTACGCCTTCACCGACAAGGCAATCCTCGTCCGGCATATCATGATCCACGAAAACAGACACCCGAAGTACGTATGTGATATATGCTCGAGGTCACTGACCTCCCAAGCCTCGCTTACAGTACATAGAAGAATCCATACAGGTGAAAAGCCGTTCAGTTGTAGACATTGTTGCAAGAGGTTCTCTGGGCGGGCGTGGTTGGTAGAGCATGAGAGGAACCATACTGGCGAGAAGCCTTTTCAATGTACGGTTTGCGAGCTGAGGTTTTCGCGGAGAAGCTCGCTGAGGCGGCACTTGAGGGTGCATAATATGTGGGAGGGTTGTAAgaggaaaaataataataataaaagtcgGGGCGGGCCGTGA
Protein Sequence
MDKWTNSCRACLSTSESFTYFLYENISHEEYWFCTSIESENILCNILKSLDAENKSCLNLKSELEDNVFEEKLENNTLVKTENLHDIEDLDTNICDDIYEEDTTTYKPITKVHNSETRKKYAKPVLKLKKSRRKFQFTCELCYKKFGYRERYEAHKLEHEGKTTAIYCAPCNKTFSTWGGLKRHNDCEHSRLTLDQLTCKLCSKVFKSPRTLGIHRSTHGERKLRICDVCGKGFRSDLTLKAHLETHIENRERRYTCQHCGKKFLSKKTCASHASRRHSDRRFICHHCNYPFTDKSNLAKHILIHEGKQPLHKCDLCHKTFAAQSSLVIHKRTHTGEKPFGCSYCPKSFSNKRMLVDHHRIHTGEKPHKCAVCEQSFTQRGTMKRHMKVHDRIYLEVKNETGEDAWSGKSRNDTTDIDAPNTDLQDIKDHIEVTNVRKTELRKSTVRNFQSRNFKCEQCNRKFSFKERLEGHMLTHEGKKAPIECKECNKTFTTWGGLRGHIEACHSPLSFKDVTCQICSKVCKTTNTLRVHLKTHKDRRERVCDECGKTFKSNVTFKNHLATHTNRSRNYPCTHCGKTYINKKTCASHISRRHANKSFICAYCDYAFTDKAILVRHIMIHENRHPKYVCDICSRSLTSQASLTVHRRIHTGEKPFSCRHCCKRFSGRAWLVEHERNHTGEKPFQCTVCELRFSRRSSLRRHLRVHNMWEGCKRKNNNNKSRGGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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