Ccan018157.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637481.1:643636-657751[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.00089 0.069 14.8 0.0 3 23 24 44 22 44 0.97 2 32 0.00027 0.021 16.4 2.3 3 23 52 72 51 72 0.97 3 32 4.4e-05 0.0034 18.9 2.9 1 23 78 100 78 100 0.97 4 32 0.0097 0.75 11.5 4.9 1 23 106 128 106 128 0.97 5 32 0.00021 0.016 16.7 3.1 2 23 146 167 145 167 0.97 6 32 0.00012 0.0093 17.5 0.3 2 23 174 195 173 195 0.96 7 32 1.2e-05 0.00089 20.7 0.2 2 23 199 220 199 220 0.98 8 32 2.5e-05 0.0019 19.7 0.8 1 23 226 248 226 248 0.98 9 32 2.1e-05 0.0016 19.9 3.1 1 23 254 277 254 277 0.98 10 32 4.5e-05 0.0035 18.8 3.5 2 23 460 481 459 481 0.97 11 32 6.6e-06 0.00051 21.5 1.5 2 23 484 505 483 505 0.96 12 32 2.9e-06 0.00022 22.6 0.7 1 23 511 533 511 533 0.98 13 32 2.5e-05 0.0019 19.6 1.9 1 23 539 561 539 561 0.98 14 32 1.5e-05 0.0012 20.3 0.5 1 23 567 589 567 589 0.98 15 32 6.5e-06 0.0005 21.5 3.9 1 23 595 617 595 617 0.98 16 32 2.3e-06 0.00018 22.9 1.8 1 23 623 645 623 645 0.95 17 32 1.7e-05 0.0013 20.2 3.6 1 23 651 673 651 673 0.96 18 32 0.074 5.7 8.7 0.0 2 23 692 715 691 715 0.88 19 32 5.7e-05 0.0044 18.5 2.2 1 23 721 743 721 743 0.98 20 32 1.9e-05 0.0015 20.0 5.8 1 23 749 771 749 771 0.98 21 32 0.0095 0.73 11.5 1.0 1 23 860 882 860 882 0.97 22 32 0.0026 0.2 13.3 1.5 1 23 887 909 887 909 0.97 23 32 0.022 1.7 10.4 0.3 1 23 916 938 916 938 0.93 24 32 0.00087 0.067 14.8 0.5 1 23 946 969 946 969 0.94 25 32 7.7e-05 0.0059 18.1 0.3 1 23 975 997 975 997 0.98 26 32 6.1e-05 0.0047 18.4 1.3 2 23 1003 1024 1002 1024 0.96 27 32 1e-06 7.8e-05 24.0 1.9 1 23 1030 1052 1030 1052 0.98 28 32 3.8e-06 0.00029 22.2 1.0 1 23 1058 1080 1058 1080 0.98 29 32 0.027 2.1 10.1 0.9 1 21 1088 1108 1088 1111 0.90 30 32 1.9 1.4e+02 4.3 1.6 1 23 1117 1140 1117 1140 0.95 31 32 0.02 1.5 10.5 3.6 1 23 1146 1168 1146 1168 0.98 32 32 3.1e-06 0.00024 22.5 2.3 1 23 1174 1197 1174 1197 0.92
Sequence Information
- Coding Sequence
- ATGGACTCAGAAGTTAAGGAAAAAGAGCCTCTACGGGTGGCAACACCGGGCTCTCACCGCAGATGGGCATGTCCAGAATGCGGCAAGGTATCGTGGTCGCCGGCGCACCTGCGCATCCATCTGCGCGTGCACACAGACGAGCGGCCGGCGTGCTGCCACGTGTGCGGCGCCAGgtttcgGACCGACGGCAACCTCGCGCGCCATCTGCGCGCGCACCGCGGGGAGAAGCCGTTCGCGTGCAGACACTGCTCTAggagATTCACCCAAAAGTCAGTGCTGATCAAGCACATCCGAATCCACACAGGCGAGACACCCTACGCCTGCGACATATGTCACAAGCAGTTCTCCCGCAGCTTCACCCTGGCCTGCCACCGCCGCGTGCACGGCGTCAGCGGAGCCCCGGCccggcccccgcccccgccccccgaGAAATGGACCTGTGATGTCTGCAACAAAACATTCAAAAACAAATCCTACAGACATTCCCACATGCTCATACACACTCGGACTAAAGAGCTCCAGTGCCAAGTGTGCGAAAAAAAGTTTTCCAGTGAAGGTAGTTTAGTGAAACATTTGACAGTTCATAGTCAAGCTAAGTGTAGTGTCTGTGGTAAGGAATTGAAGACTCAAGCGAATTTGGTAAGGCATATGTTGGTACATACCGGAGAGAGACCATTTCCTTGTGGTTATTGCAGTAAAAGGTTTACACAAAAATCGGTGTTAGTTAAGCACGAGAGGATACATACTGGCGAAATGCCTTATCAATGTAAAGTGTGTTTTAAGAGGTTTTCTAGAAGCTTCACTTTGGAGAATCACTTAAAGCGAATTCATAAGAAAGAGAAATCTGAAAAATCTGAGGTGGTGTGTGATGTGAAGCCGATTTGGTGTGAGAAATGTGATCAGTGGTACAACAGTAAAGACTTTTATGTTCATGAATGTGCTATAGGAGAGAAGTTTGATTTTGGTGatgtttttgaagaaaatgatCCAGAAATTAATTATAGTGAGAATGAAGAGAATGATAGTCAATTTGTTGAAGTTAAAGAAGAATTTAGAATAGAAGAGGCAGAAAATTATCAAATTCATGAAATTAAACTTGAAAATGAAAACGATAAAGTAATAAATGATGACGTAGAAGAAACAATAAAAAGTACTGACACAGATTTAACCAATGAAGACATGAAAACAGTTAACAAAATTGTGAAGAGAAGTGAAGAGACGGAAAATCAAATTGATGAAGTTAAGCTTGAAAATGAAAACGATAAAGTAATAAATGATGACGTGGAAGAAACAATAAAAATTACTGACACAGATTTAATAACCAATGAAGACTTAAGAACTGTTGGCAACAAAATTGCAAAAGTACGCAAAATATGGACGTGTAGCCTTTGCAAGGAGACTTTTAAAAAGAAATCGCAGTACcagaaacatttaaaaactcACGACACAAGCTGCGGAATATGTAAAAAACATTTCAACACCAATGGAAACCTTATTAGGCATATGCTCATACATTCAAACATCAAACCCTACCCTTGCAATATCTGTAACAAACGGTTCACACAAAAGAGCGTCCTGGTCAAGCACGAACGGATCCACACAGGCGAACTACCCTACACCTGCGATATATGCAACAAAAAATTCGCCCGTAGCTTCACGCTGCTAAATCACAAGAAAGTACACAGCACTATTAAACCGTACTCCTGTCAATATTGCCCGAAAGCGTTCACCCAACGGAACGCTCTTATGATCCATGAAAGGAATCATACCGGCGAGAGACCATACACCTGCGAAATATGTCACAAAAAGTTTACTAGTAATAGTACCCTGACCAGTCACAGTAGGATTCATAAAGGCGTCAAGCCGTTTCTGTGTGAGATTTGTAACAAGCAATTTACTACTAGTAGTAATTTCTACAGCCATATGAGGATTCATAGAGGGGACAAAAGGCACGCTTGTGAAATATGTCAAAAGAAATTCTACACTAACAGTAGTTTGACGAAACATAAGCGGGTTCACGAGAATAAGGTGTGTAAAGTGGAGGAGATAGTCGAGGACGCGAGCAAGCGGTTCccgtgcggcgcgggcgcgtgccGCCGCCGGTTCGCCagcgcgccgctgctggcgcgaCACGCGCGCTCGCACAACGGGGACAAACCATACGCGTGCGAGCAATGCCACAAGAGGTTCGGCCTCAGCGGCGACTTAAACCGCCACCGGCGGACACATACGGGGGAAAAGCTATATTCGTGCGAGATCTGCCACAAGCGGTTTACACGGAGCGGCACGCTTAAACACCACCTCAAGTTACACCAGACCACAGATGACTCACAAATAGAACAAGTGACGATCAAAACAGAATACGATGTACATCCCGAGGTCGAAGTTAAAGTTGAAGTGGAGTACGAGGATCACAATATATGCTCTGTCGatgttaaagaagaaagaaCTGAGAGTAGCATTGTGTTCAAGGAGGAAAAAGAAGATTGTGAAGATGGAAATAATGAAAGGATTTCTGTGTCAACAAAGCGTAATAGTGCAATACTGAATAAAGCTGCACCGGGACCTCCAGGCTACTTCCCATGCCACATATGCCGTGCCGAATTCGACTACCTGTACCAAGTGACCCGTCACCTGAACGAACATGTCCGCAGAACGTTCCCCTGCCCACACTGCAGCTGCATCTTCAATTACGAGTCAGATTTAGACACTCACCAAGCGATACATAATACGGATGCTTCAGTATATACCTGTGATGTATGCAAAGAGAAATATCCTACTAAAGAGTTACTTGATATACATAAAGATGACCATAAAGAACAGAATGATGAAGGATTTCCCTGTGACATATGCAACGTTAAACTTAAATCGAAATACAGTTTAAAAGTCCATATGAGTGCGAAACATTTGAGCGTTCAACCATATTCTTGTGATGAGTGTGGGAAGAAATTTCCAGCACAGTGGAGGCTGAAGGAACATATGAAACTGCATACAGGCGACAGCCTACCTTGTACGTTCTGTGACAAACAGTTTACATCGCAAAGCAAGCTAGAATATCACCTAACAACCCACACCGGTGAAAGACCATATGAATGCAAAGTTTGCTACAAGCGTTTCTCAAGAGACTCCAACCTAAAAGTTCACATGAGACTACATACCGGACAGAAGAATTTCATCTGTAACTTATGCGAAAAGGCTTTCTACACTAAATCGGATCTGACGTCTCACCAGAAAGTTCACGATAAAAACAAGCCGAAACCTTTTAAATGCACGGATTGTGAATCCGCATTCGCTTTAAAAAGACAGTTGAAGAACCACTTCGTTAACATGCACAGTACGGAGACTCCATTTTCCTGTGAACCTTGTAACGTTAAGTTTAAGAGTAAAAAGGTTTGGAAATACCACACAATGATGCGGCATTCTGACGAGAAGCCACACAAATGCAGTGTATGTGCTAAAGGTTTCTTAATTAAGCATCTTCTAGAAAAGCACATGAGGACTCACACTGGAGAGCGGCCATTTGCCTGCAAGCTCTGTGATAAGAGCTTTAAGTCTAGATCTAATTTAAATACTCATATGGGCCATGTACATAAAGATGCTAAGAAAAGTCAAGGAtga
- Protein Sequence
- MDSEVKEKEPLRVATPGSHRRWACPECGKVSWSPAHLRIHLRVHTDERPACCHVCGARFRTDGNLARHLRAHRGEKPFACRHCSRRFTQKSVLIKHIRIHTGETPYACDICHKQFSRSFTLACHRRVHGVSGAPARPPPPPPEKWTCDVCNKTFKNKSYRHSHMLIHTRTKELQCQVCEKKFSSEGSLVKHLTVHSQAKCSVCGKELKTQANLVRHMLVHTGERPFPCGYCSKRFTQKSVLVKHERIHTGEMPYQCKVCFKRFSRSFTLENHLKRIHKKEKSEKSEVVCDVKPIWCEKCDQWYNSKDFYVHECAIGEKFDFGDVFEENDPEINYSENEENDSQFVEVKEEFRIEEAENYQIHEIKLENENDKVINDDVEETIKSTDTDLTNEDMKTVNKIVKRSEETENQIDEVKLENENDKVINDDVEETIKITDTDLITNEDLRTVGNKIAKVRKIWTCSLCKETFKKKSQYQKHLKTHDTSCGICKKHFNTNGNLIRHMLIHSNIKPYPCNICNKRFTQKSVLVKHERIHTGELPYTCDICNKKFARSFTLLNHKKVHSTIKPYSCQYCPKAFTQRNALMIHERNHTGERPYTCEICHKKFTSNSTLTSHSRIHKGVKPFLCEICNKQFTTSSNFYSHMRIHRGDKRHACEICQKKFYTNSSLTKHKRVHENKVCKVEEIVEDASKRFPCGAGACRRRFASAPLLARHARSHNGDKPYACEQCHKRFGLSGDLNRHRRTHTGEKLYSCEICHKRFTRSGTLKHHLKLHQTTDDSQIEQVTIKTEYDVHPEVEVKVEVEYEDHNICSVDVKEERTESSIVFKEEKEDCEDGNNERISVSTKRNSAILNKAAPGPPGYFPCHICRAEFDYLYQVTRHLNEHVRRTFPCPHCSCIFNYESDLDTHQAIHNTDASVYTCDVCKEKYPTKELLDIHKDDHKEQNDEGFPCDICNVKLKSKYSLKVHMSAKHLSVQPYSCDECGKKFPAQWRLKEHMKLHTGDSLPCTFCDKQFTSQSKLEYHLTTHTGERPYECKVCYKRFSRDSNLKVHMRLHTGQKNFICNLCEKAFYTKSDLTSHQKVHDKNKPKPFKCTDCESAFALKRQLKNHFVNMHSTETPFSCEPCNVKFKSKKVWKYHTMMRHSDEKPHKCSVCAKGFLIKHLLEKHMRTHTGERPFACKLCDKSFKSRSNLNTHMGHVHKDAKKSQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -