Ccan033823.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637496.1:515457-518252[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-08 0.00011 22.9 0.0 2 39 17 54 16 60 0.88 2 2 2 4.6e+03 -1.4 0.0 5 20 428 442 426 446 0.81
Sequence Information
- Coding Sequence
- ATGGTGAGGAACTACGTCCGAAAGACCGACCGGGGTCTCACTTACTCCAAAGAACAGCTCCGGGAAGCCGTAGAGAAAGTCAGGTCCGGGGAACTCAACGGCTATGAGGCCTCAGTCAGATACAACATACCCCGGACAACCGTTTACGATCACGTCATTGGACGAAGCGGAAAATCCCTCACCCTGGGCAAACCGCCATTACTATCATCCGAAGTAGAGAAGATACTAgcagagaacctcaagattttacAAGATAATGGATTCAATTTAGGGAAAAAAGAAGTACTTGAGCTCGTTGGAGCATATCTGAATTCAAACAATGTGAAGAATCCGTTCAAATCAGGAAAGCCTGGCGATTGCTGGCTCTTAGCGTTTTGCCAAAGAAATGATTTCAACCCGAAACCCTTGTACAAAGAGTTCGGAGCAACATACGTTAATAAGGAGAAAGACATTATAATAGTCAAGGAGTTCTATTCTATGTTAAAAATGAGGATAGATAAATTAGATTTAGCTGATAAACCTGGACAGATTTGGCATATTGAAGAACATAGCTTTTATAAAGGGAAAAGAGTGACGCATGATGATAAACAGAAAGATGTTACGTATGTGACAGCATTTAATGCAGAAGGTAAAAAAGCGCCGCTTTTAACAGTCTCACAAGGGCAGGAAAGTCATGATTGGATGCTTGGGAAACATATAAATGTAAACCACACTCGAGGCATGTGTGCTGAGGTGTTTAAAAACTACTTCGAAACAGTATTTTTGAACTACATTGACGATAGTCGACCGAACTTGGTGATTTTAGAAGCACAGTCTTCTCTCGTTGACATAGATCTCGTCGCTGCGTCTACAAAAGCTAAAGTCACTATGGTCAAATGCCCAAGATATTTAGAAGGATTAGATATCCCTATAGCTAAAACTTTGAAGCTAAGATTCACAGAATTCAAAGGCCCAACTAAAGAGTTTTCAAACTTCATAGCTGATGTCTTCGACGGATTACAAGTCTCTGAAATAGGAGACGATTTTAAAAATGCTGGCATTCATCCATTTTCAACAGTCCCTGATGATAAATTTGATGATAATCAATTAAAGGTTTATGAAGAATATAAAGCGTTCAAAGAAAGGCATTTGAACAGCTCGGCGGTGAATGACCCAGAAGAGGTCATAGTTAAGGAAGATATTGAATTCCAAGAGAATTTCATGATGGAGTTAGATGACATTTCAACGTCTATGTCTTTGACTGGTGAGCTAGATTCGCCAAGTACGTGTAGCGGGGAGATGTTAAGAAATGCCTTGATAGCTGTCAGAAAAGGCCTCACTATCGCGGAAACTAGTTCatcaataaattatgaaacAGATCAGACACATGCAGGATTTGCTGCAAGAGACGCAGATACAAATACTGAGGAAAACAAGCTAGTTTCCTTTATAATGGATCTCAATAACGCAGGGTTTGTGATAAGAGAAGAAAACTTAGCTGAAGACATTCACAGTCTCGAAGGAACTCCGTTTAAGAAAACCACAGCCCGACTTTCCTGTGAAGAGTTCTTGAATCGATATCCAACGATGAAAGATAAATTAAAACAGAATCAGCCCTCTTTGAATATCACAGCTGCATCTATTAGAGTTTGGCTCGTCTGTGTCAAGAGATATCTAAAGAAGATAAATTTAGACGACGTATTAAAATGTCCGAAGCGAATTTTCAACTTTGGAGAGGCAGGGTTCTGTCTTAAAGATGATATTCAAGAAAACGAGTCTGAACATGATGTAACTGTTTTGGTAACGGCGTCGGCGGATGGTATCATGCAATCTCCATCTGTTATATTCCCATTCAAACTTCCCAATGGTTTTTCATCGTGCTGGACAAAAGCAGACATCCTTTACGATCATATAACTGATGTTTTTTATCCTTGgctaatagaaaaaaatattaaattcccagtgattttattcatgaaccGGATGACACACATAAATTTATGTCTATTCGAATTCTTTAAAGAAAAACAGATAATACCTATCGCTTTGCTAAATACTGAAATACAGCCACTGGAACCTGTATTTAGATCACTAAAACTATATTGGGGACAGAATAACAGTACTATACAAGAGTTAAGGAAAGATATCTTAGCTAAAGAGTtagaaaaatacataaatagagATTACAGAAAAGAAATCACAGATAATTTCAAATCTTGTGGAATATATCCTTTCAATCCCAATATCAAATACATTAACGAATTAAATAGAAGGATAGATAAACGAAGAACAGAAGATTCAGAGAAGCAGACGAATGAGAGTAATGAGAAAACTCCTGACAATCTTCTAAAAGAAGTAGAGAAAAGAGTAGCAAAGGAAGTGCTAGAAGAATTCATGAAATCGGGTGATACGTGGGAAGGCGATCCTGTTCATACAAGCCTTTTTTACTTCTGGAAGGGAGTTAGAGATGAAGAACAGATGGAGATTCCTATAGAACAAACCGTTACGCTGAATGTGGACGGTGACATTTTTGAGGTGTTGTTTGACGACGCGGCAGCGCAATTGCGTAACTTTTGA
- Protein Sequence
- MVRNYVRKTDRGLTYSKEQLREAVEKVRSGELNGYEASVRYNIPRTTVYDHVIGRSGKSLTLGKPPLLSSEVEKILAENLKILQDNGFNLGKKEVLELVGAYLNSNNVKNPFKSGKPGDCWLLAFCQRNDFNPKPLYKEFGATYVNKEKDIIIVKEFYSMLKMRIDKLDLADKPGQIWHIEEHSFYKGKRVTHDDKQKDVTYVTAFNAEGKKAPLLTVSQGQESHDWMLGKHINVNHTRGMCAEVFKNYFETVFLNYIDDSRPNLVILEAQSSLVDIDLVAASTKAKVTMVKCPRYLEGLDIPIAKTLKLRFTEFKGPTKEFSNFIADVFDGLQVSEIGDDFKNAGIHPFSTVPDDKFDDNQLKVYEEYKAFKERHLNSSAVNDPEEVIVKEDIEFQENFMMELDDISTSMSLTGELDSPSTCSGEMLRNALIAVRKGLTIAETSSSINYETDQTHAGFAARDADTNTEENKLVSFIMDLNNAGFVIREENLAEDIHSLEGTPFKKTTARLSCEEFLNRYPTMKDKLKQNQPSLNITAASIRVWLVCVKRYLKKINLDDVLKCPKRIFNFGEAGFCLKDDIQENESEHDVTVLVTASADGIMQSPSVIFPFKLPNGFSSCWTKADILYDHITDVFYPWLIEKNIKFPVILFMNRMTHINLCLFEFFKEKQIIPIALLNTEIQPLEPVFRSLKLYWGQNNSTIQELRKDILAKELEKYINRDYRKEITDNFKSCGIYPFNPNIKYINELNRRIDKRRTEDSEKQTNESNEKTPDNLLKEVEKRVAKEVLEEFMKSGDTWEGDPVHTSLFYFWKGVRDEEQMEIPIEQTVTLNVDGDIFEVLFDDAAAQLRNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -