Ccan035478.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637497.1:6673818-6674831[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-11 7.6e-08 33.1 0.0 1 39 11 49 11 53 0.84 2 2 4.9 1.1e+04 -2.6 0.0 34 45 117 128 116 128 0.82
Sequence Information
- Coding Sequence
- ATGGTGCCAAAAAGCCGCCGAAAAGATTATACACCGGAGCGAATGGAAAGGGCCATGGAGGCCGTAAGAAAAGGTGAAAAAGTTTCAAATGCAGCTAATAAATTTGGAGTTCCTCGAAGTACCCTTGTAGATAAAGTATCAAGAAAAACTTCAATGTATTGCACTATGGGACCGAATACCATTCTGACAAAAACAGAGGAAGACATATTAGTGCGGTGGTTAATAGCATTATCCGAAAGACACATCCCAATCAATAAAGATAATCTATTAGATAGCGTGCAGAAAATTATTACAAATCAACAAAGACCAAATCCGTTCACAAGTAATAGGCCGGGTAAAAAGTGGTTCCAGTCTTTTCTAAAGAGACATCCGGAACTGTCACAAAGAATACCAGAAAATTTAACCAAAGCTCGAGATAACGTGACAGAACATGAAATTAGAAATTGGTTTCAagaaattgaaaattatttagAACAAAATAATCTGAAAACTGTTCTAGACGATGCAAATAGAGTTTTCAATGCCGACGAAAGTGCATTTTTTCTCTCTCCAAAACCCGGACGTGTCCTCGCTAAGAAAGGAGAAAAACACTTATACAATGCCTGTGGCGACGAAAAGGATAACCTTACCGTTCTGATCACAGGCAATGCTGCTGGGAAACTTGCTCCTCCTATGATAGTTTACAATTATGAACGAATACCTGCATCCATCTCTGCCAGCGTTCCCGATGAATGGGCGATAGGAAGATCCGAAAGTGGGTGGATGTGCGGTAATACGTTCTACGAATATGTGACAAATATCTTAAACCCGTGGTTAGAACTGAACAACATTAAAAAACCGATCTTATTTTTTTTGGACGGGCACAAGTCTCATCTTACGTTACACTTGTCAAAGTTTTGCTCCGAAAATGGAATTGAAATTATAGCATTATACCCCAATTCAACACACACATTCTTCAGCCAATGGACTTGTCTGTGTTTAGACCTCTTAAAGCTTACTGGAAGCAAGCCGTAA
- Protein Sequence
- MVPKSRRKDYTPERMERAMEAVRKGEKVSNAANKFGVPRSTLVDKVSRKTSMYCTMGPNTILTKTEEDILVRWLIALSERHIPINKDNLLDSVQKIITNQQRPNPFTSNRPGKKWFQSFLKRHPELSQRIPENLTKARDNVTEHEIRNWFQEIENYLEQNNLKTVLDDANRVFNADESAFFLSPKPGRVLAKKGEKHLYNACGDEKDNLTVLITGNAAGKLAPPMIVYNYERIPASISASVPDEWAIGRSESGWMCGNTFYEYVTNILNPWLELNNIKKPILFFLDGHKSHLTLHLSKFCSENGIEIIALYPNSTHTFFSQWTCLCLDLLKLTGSKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -