Carg017266.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994592.1:2036452-2043795[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.11 13.6 1.4 1 23 271 294 271 294 0.92 2 12 0.016 1.7 9.9 2.5 1 19 311 329 311 333 0.94 3 12 8.3e-06 0.00086 20.3 1.3 2 23 339 360 338 360 0.97 4 12 2.2e-06 0.00023 22.1 0.3 1 23 364 387 364 387 0.97 5 12 0.057 5.8 8.2 0.4 1 23 390 412 390 412 0.95 6 12 5.5e-05 0.0057 17.7 0.3 2 23 485 506 484 506 0.96 7 12 0.47 49 5.3 0.5 3 23 527 548 526 548 0.88 8 12 7.5e-07 7.7e-05 23.6 4.1 1 23 554 576 554 576 0.98 9 12 0.00099 0.1 13.7 1.5 1 23 581 603 581 603 0.97 10 12 0.00059 0.061 14.4 2.4 2 23 610 632 609 632 0.93 11 12 2.3 2.4e+02 3.1 2.0 1 19 639 657 639 658 0.86 12 12 0.006 0.62 11.3 2.0 3 19 671 687 670 692 0.89
Sequence Information
- Coding Sequence
- ATGGAAGCCGCGGACGCTCAGAAAGATATGATGTACCCGGTGATATTCATACCGAAAAACTGTACAAATCTGCAAACGGAGTGCGAGGTGACGGACAATGTGTTTATAGATCTGCACATAACGTCCCTGGATACGGAGGGGAACGAGATGAGCATTTACAACGGATTCTGCAACGTGAAGCTCGTGGACAGCTACGACGTCAACGTCCAAGAGGTGGACACGGCGCAACCCGAGCCTCTGGACATATCCGAGGTCCAAATACCGAACTCGTCCTACAACCAGTCCCAGGTGTGGATAGACCCCGCCAGAAGCCCATACGTGTATAACAACTACGAGGGAGTGAACCCGGAACAGTGCGTCTACAACTCCAACGCCCGGATAACCGTGGAACAACACAACACGTACATCACCCAGAACGTATACAACTATTCCGAAATAAACGACTATCCAGATCAATTCGAACACAAGAAATTCAGGAAGGTGCATATGAGTGAACTGAATCAAACCATAGATCAGTTGTATAAGGAGGACGAAATCGAATGCGAACAGCTGGACGAGTGTACGGAGATAATCGAGGAAGATGTAGTGGAGAGCGAATCTATAAAGGACAACGGGGCTCTCAAACAGCTGATGTCCACGGAGATCCAGCCAGCATCCAAGCAGCAGAAGACTATTCTGTACGTTGGCAACGACTCACAGTACGGGCAGACGATACAGAATATCGCTATTAACGATCCTAGCGTCGAGTGCGTCGATAACGTTGAGGACGAGCAGGAATATGTTGAAAACAATCAAAGCAACAAAAAGAAATATCAATGTGATAAATGCAAGCAAATATTCTACAACCTAGCCACTTTCAAACGTCACGCAGTCAGCAATCATAGCCATAAATTACCAGTTATTGATGCAGACACGATGACCGAAGTCAAATTTATTTGCTCCCAATGTGGTAAAAACTACAAAAGCCAGGAGAAATTCGAATTGCATTGCGTGGGACACGGTGACCCGGACCTAGAATGTGACAAATGCAAAAAGGTGTTCGCATCAAAATTCACCCTTCGCACCCATCTAAAAATCCACAACAGAAAATACTCTTGCGATTATTGCCCAAAATCCTACACTAGCGATGACGATTTGAGAAATCACATGGCAAAAATTCATTTTATATTTACATGTAACCAATGCGATTTTACGTCGAATAACTATGCGGCGTTGGACCTGCATAAAGATGTTCACAAGGTGAACAAAGTCATAAGCGATACGGAGTCAGCCGTGTCCATGGCATCATCGAGTAACCATTCCATAGAACTCGACGAGGAGGAAGATGTAGAGGAGTTCCTAACCAGACACGAGCAGATCGAGGAGGCGGAGTCGGTTATAGCTAAAGTCATAAACAATGAGATCTTCCTGCTGCATGCAAAAAAGGCGAGGAAGCATAGAAAGTATAACAAGAAATGTGAAGTATGCCAAAAAGCCTTTGACCGAGTTGGTGACCTCAAGAGACATCTCATAGAACATGTAATTAGAAGTACTTTAGCTAAAACACCGATAAGCAAAAATGGAACTCTCACAATTTTATGTGAGGTATGCCAGAAGGTAACCTTCACAAAAGTTGATAAATATAAAGCTCACTTAAGAGAGCACGCGAAGCTGACTATCTACAAATGTACTTTCTGCGATAAATCCTTCAGTGACTCCAGTAACTTTTCAAAACATAAAAAGATTCACGGTGCAACATTTTTCCAATGTGATCTTTGTCAACGTAAGTTTAACTCAAAGAGAATGATCGCTCAGCACATGGACTATCACAGGAGCCATGCCCCATTACCCTGTTTCTATTGCAATAAGATGTTTCACTTTGAGTCTATGCTCAATAAGCATATCAAATTCGCCCATATGCAGGAAGCTTCGAAGTTCCGCTGTCGCTTCTGTCACGAATATTTCAGAAGTTTGAAGGAGAAATGGGACCATGAATGGAAAATTCATAATGTAAGAAAAATCATTGTGGACTGTCTGATCTGCGGGGCAAAGTTTAGGAAGTATTCTGAACTCAAACGCCATTGTAACAATATACATGAAGTGGAAATACCGTTGGCTAAAAGTATAATGGGCAACGCATATGTAGCCAGAAGAAAGTAG
- Protein Sequence
- MEAADAQKDMMYPVIFIPKNCTNLQTECEVTDNVFIDLHITSLDTEGNEMSIYNGFCNVKLVDSYDVNVQEVDTAQPEPLDISEVQIPNSSYNQSQVWIDPARSPYVYNNYEGVNPEQCVYNSNARITVEQHNTYITQNVYNYSEINDYPDQFEHKKFRKVHMSELNQTIDQLYKEDEIECEQLDECTEIIEEDVVESESIKDNGALKQLMSTEIQPASKQQKTILYVGNDSQYGQTIQNIAINDPSVECVDNVEDEQEYVENNQSNKKKYQCDKCKQIFYNLATFKRHAVSNHSHKLPVIDADTMTEVKFICSQCGKNYKSQEKFELHCVGHGDPDLECDKCKKVFASKFTLRTHLKIHNRKYSCDYCPKSYTSDDDLRNHMAKIHFIFTCNQCDFTSNNYAALDLHKDVHKVNKVISDTESAVSMASSSNHSIELDEEEDVEEFLTRHEQIEEAESVIAKVINNEIFLLHAKKARKHRKYNKKCEVCQKAFDRVGDLKRHLIEHVIRSTLAKTPISKNGTLTILCEVCQKVTFTKVDKYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGATFFQCDLCQRKFNSKRMIAQHMDYHRSHAPLPCFYCNKMFHFESMLNKHIKFAHMQEASKFRCRFCHEYFRSLKEKWDHEWKIHNVRKIIVDCLICGAKFRKYSELKRHCNNIHEVEIPLAKSIMGNAYVARRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935097;
- 90% Identity
- iTF_00745012;
- 80% Identity
- -