Carg020954.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994585.1:18252282-18259327[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.4e-06 0.00056 20.9 0.8 2 23 164 185 163 185 0.97 2 9 0.00041 0.043 14.9 2.7 2 23 193 214 192 214 0.97 3 9 0.00036 0.038 15.1 0.2 1 23 220 242 220 242 0.97 4 9 1.3e-05 0.0013 19.7 2.8 1 23 248 270 248 270 0.98 5 9 1.6e-06 0.00017 22.5 0.2 3 23 278 298 276 298 0.97 6 9 4.3e-05 0.0044 18.0 0.4 1 23 304 326 304 326 0.98 7 9 6.8e-06 0.0007 20.6 2.3 1 23 332 354 332 354 0.98 8 9 0.00017 0.017 16.2 0.4 1 23 360 382 360 382 0.97 9 9 6.3e-06 0.00065 20.6 5.0 1 23 388 410 388 410 0.97
Sequence Information
- Coding Sequence
- ATGGCACATTTATTAGATTTTAAAAGTATTTGTAGAGCTTGTTTGTCTGATGCAGGTCCTTTGAAAGACTTATTTACTGTTTGCTCAGCCGGAGTATTTAAATACTGCACTTCTGTGGAGGTTGCAGACAATGATCTACTTCCAAAACTGATATGTCAAACATGTCTGGAGTTACTTAACAAGCTGTACTATTTCAAACAAGTGGTTGTAAGGTCCAATGTTATATTAAAGCAACAGTGCCGCTTGCAGACAAAAGATGATGTAAGCACAAATGAAAATATTGAGATTCATGAAGTGAGCATAACAGAAGCAAATTATGAATTAAAAGAGCAGGAACACAGTACATTCCAAGATATTACACCAGCGGAAAAACCAGAACGACCCACAGATGCTATACTCATTAGTCAGATCCTCTCAAGGCGAAGACGGAGGGGTCCAGGTAGACCCCCCAAGGACCCTGATGGGCCCAAGCGAAAGGGGGAGAGGATGAAGTGTGTGAAATGCGGCAAGAGCTTCCAGAAGTACGAGAACTTTGAAGCCCATATGCGAGGACACTTTGGGAAGAAACCGGACATAAAATGCAAGCACTGCGACAAAACGTTCCTCTCGCTGCGCAGCCTGAGCAGCCACGTCCGTATACACTCAGCGGTACGCAAATACCAATGCCAGGCGTGCGGCAAGAGCTTCGCATATCTCAATGTACTGAAAACCCACGAGCTAATTCACGCGGGCGTCAAGCGACACCAGTGCCATCTGTGCGACGCGAAGTTCGTGCAAGCTTACAACCTCAAGATGCACCTCGAGACCCACAACGACCAGAAGAACTACGGCTGCTCGCAGTGCGGCAAGAAGTTCGCGCAGCCGGGCAACCTCAAGATACACCTCATCCGGCACACCGGCATCAAGAACTACGCCTGCACCATGTGCGAGATGAGGTTCTATATTAAGGCAGATTTAGTAAAACACATGAGATCTCACTCCGCCGAGAAGCCGTTCTCCTGCCAGCTCTGCGACAAGACGTTCAAGAGTAGAAGCTTCCAGGCCATACACATGCGGACTCATACGGGCGAACGCCCATACGCCTGCGACTTGTGTCCGAAGAAGTTTATGGCTCGGAAGGACCTACGGAACCATCGTATGATCCACACGGGGGAGAAGCCCCACAAGTGTCACGTGTGCGGCCAGGCGTTCATACAGAAGTGCGCCCTGAACCGACACATGAAGGGCCACGCGGCGCCCCCGCCCGCGCCCCCGCCGCAGTTAGACCCGCCCCTGCCGCTGCACTACTGGCCCGGGCACACGCTGTAG
- Protein Sequence
- MAHLLDFKSICRACLSDAGPLKDLFTVCSAGVFKYCTSVEVADNDLLPKLICQTCLELLNKLYYFKQVVVRSNVILKQQCRLQTKDDVSTNENIEIHEVSITEANYELKEQEHSTFQDITPAEKPERPTDAILISQILSRRRRRGPGRPPKDPDGPKRKGERMKCVKCGKSFQKYENFEAHMRGHFGKKPDIKCKHCDKTFLSLRSLSSHVRIHSAVRKYQCQACGKSFAYLNVLKTHELIHAGVKRHQCHLCDAKFVQAYNLKMHLETHNDQKNYGCSQCGKKFAQPGNLKIHLIRHTGIKNYACTMCEMRFYIKADLVKHMRSHSAEKPFSCQLCDKTFKSRSFQAIHMRTHTGERPYACDLCPKKFMARKDLRNHRMIHTGEKPHKCHVCGQAFIQKCALNRHMKGHAAPPPAPPPQLDPPLPLHYWPGHTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782823;
- 90% Identity
- iTF_00744985;
- 80% Identity
- -