Carg013037.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994578.1:19652514-19662668[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.6e-05 0.0026 18.7 0.2 2 23 322 343 321 343 0.96 2 14 0.11 12 7.3 3.3 1 23 349 371 349 371 0.97 3 14 0.00013 0.013 16.6 3.1 1 23 377 399 377 399 0.98 4 14 0.0085 0.88 10.8 5.5 1 23 405 427 405 427 0.98 5 14 1.3e-05 0.0013 19.7 5.6 1 23 433 455 433 455 0.98 6 14 1e-05 0.0011 20.0 1.4 1 23 461 483 461 483 0.96 7 14 1.1 1.1e+02 4.2 0.3 10 23 499 512 496 512 0.85 8 14 7.3e-05 0.0075 17.3 1.4 1 23 518 540 518 540 0.98 9 14 0.0056 0.58 11.4 2.6 1 23 546 568 546 568 0.95 10 14 0.00048 0.05 14.7 0.9 1 23 574 596 574 596 0.94 11 14 3.5e-05 0.0036 18.3 1.6 1 23 602 624 602 624 0.98 12 14 0.0016 0.16 13.1 0.6 1 23 630 652 630 652 0.97 13 14 0.002 0.21 12.8 0.5 1 23 658 680 658 680 0.97 14 14 9.4e-05 0.0097 17.0 0.3 1 23 686 708 686 708 0.93
Sequence Information
- Coding Sequence
- ATGTTGAAGAATACTTGTTGCTACTTATGCTTATGTATAAATAAAAGAACAATTAACATTTATGAAACAGATCTGCAGTATGTCTATGAAAAACTCGCAGACTTCAAGGTACGTATAATTAAAGACAACGTATGCTGGATGTGTTACATTTGCCACACAAGACTGCAACAGTGTCTTCGGCTGCAGCAGTTGGCCGTACAGACACGAGGTCTCATTGATCACCACTCCCAGAATAAGGACAAAACGGATTTTGAAATGTTCAAACCTTTATTGGAGTTATCAATATACTTTTCAAACTTTATTAATAAGGAGTCAGATGTGAAGACGGAACCATCCGATGATGACGTAATTGAATGCGTAGAAAATACATATGACTATAAAGATTTTAAACAACCTTTAATAGAAGATATGCTGGTTCGAGATGATATCTGTGAAGAGAACCAGAACACGGAAAACATTTCCAAAACATACTTTTCAGACTATATGGAACAGGAGTCCGTTGTGAAGACAGAACCATCCGATGATGAAGCAATTACAAAGATTGATTGTGTAGAAAATACATGTGACTATAAATATAATGAACCACCCTTAATAGAATATGAACATATGGTGGTTAGAGATGCTGTCTCTGAACAGAATTTATCGAATGTGGACCAAAGTGATACTCGGCTGGGGTCAAAAGAGCTTGAATTGAAAATAGTTAAGCTGAGTCAAAGTGTTATTGACAAATATGTTCGCCCAAGTACCACAATGCACATAGTCACAGAAGAATATCTTGAGGACAAGGCAGAGCACACTGCTGCTCTATGCACAGATGAACAGAGCATAGACAATGCGGAAATGAATCAAGATATAAAAGAAGATATTGGAGATATAGGTATCGAACAAGATGAAGAGCGAAACGACACAAATAACTGCAAGGAACACGCCAGTGAAGCACAGTACGGCTGTCACAAGACACTCAGCTGTGATATTTGTTTGGAGACGTTTACATCCAGGAGCGCATTAGTACGGCACATCAAGGAACACACAGTTGATAAACCATATACCTGTGATACTTGTCAAAAGAGTTTTTTATGTAATGCTTATTTGATAGTACACACAAGAAAGCATACAGGTGAAAAACCATATATCTGTGATATTTGTCATAAGAAATATGTAACTAAAAAACGGTTGCAATTACACACACGAATTCATACAGGTGAAAAACCATTTAGCTGCAAAACTTGTCAAAAGAAATTTTTAACTAAATTTTACTTGAAAGTACACACAAGATACCATACAGGTGAAAAACCATATAGCTGCAATACTTGTCAAAAGAAATTTACAACTAATCACCAGTTGAAATTACACACAAGAATTCATACAGGTGAAAAGCCCTATAGCTGCGATACTTGTAAAAAGAAATTTTCACGAAAGGGTACTTTGATTAGACATTCAGCAGTTCATATAGGTGAGAAACCAAATAGCAGCAATACAATTATTCAAAAGATACTTGAAAGTAACAGTCAGTTGAATAGACATGCAAAAAGTCATACACGTGCAAAACTATATACCTGTGATATTTGTCAAAAGAAGTATACAAGCAAGAGTATATTGAAAAGACACACAATAATTCATACAGGTGAAAAACCATACAGCTGCAAAAATTGTAAAATACGATTTGGAACTAAATGTCAGTTGAAATTACACGCAGTAATTCATACAGGTGAAAAGCCATTCAGCTGTGATACTTGCCAAAATAAGTTTGCACGTAAGGGTGATTTGAAAAGACACTCAGTAGTGCATATGAGCGAGAAACCATATAGCTGCGATTCTTGTGATAAGAAATTCGCAACTATTAGTCACTTGAAATTACACGCTTTAACTCATACGGGTGATAATCCATATAGCTGTGGTAGTTGCCAAGCTAAGTTTGCACGTGCGTGTGATTTGAATAGACACTTAGTAGTTCATGTAGTTGAGAAACCATTTAGCTGCGATTCTTGTGAAATGAAATTCGCAACTGATAGTCTGTTGAAATCGCACACATTAGTTCATATATTTGAAAAGCCATACAGCTGCGATATTTGCCCAACGAAATATGCACGTTTAAGTGATTTGAAAAAACACAAAGTAGCTCATATAGGTGAGGAACCACATCAATATCATACAATTTTTCAAAGTCAATTTACAAGTGAGGGCAATTTGAATAGGCACTCAGTAGTTAATATAGGTGAGAAACTAGACAGCTGCGATGTAGTTTTTCAAAAGAAACTTGCACGTAAAAGTTATTTCAATAAATGTAAAGGAAATCACAGAGATGAAAAACCAGATAACTGCATATAA
- Protein Sequence
- MLKNTCCYLCLCINKRTINIYETDLQYVYEKLADFKVRIIKDNVCWMCYICHTRLQQCLRLQQLAVQTRGLIDHHSQNKDKTDFEMFKPLLELSIYFSNFINKESDVKTEPSDDDVIECVENTYDYKDFKQPLIEDMLVRDDICEENQNTENISKTYFSDYMEQESVVKTEPSDDEAITKIDCVENTCDYKYNEPPLIEYEHMVVRDAVSEQNLSNVDQSDTRLGSKELELKIVKLSQSVIDKYVRPSTTMHIVTEEYLEDKAEHTAALCTDEQSIDNAEMNQDIKEDIGDIGIEQDEERNDTNNCKEHASEAQYGCHKTLSCDICLETFTSRSALVRHIKEHTVDKPYTCDTCQKSFLCNAYLIVHTRKHTGEKPYICDICHKKYVTKKRLQLHTRIHTGEKPFSCKTCQKKFLTKFYLKVHTRYHTGEKPYSCNTCQKKFTTNHQLKLHTRIHTGEKPYSCDTCKKKFSRKGTLIRHSAVHIGEKPNSSNTIIQKILESNSQLNRHAKSHTRAKLYTCDICQKKYTSKSILKRHTIIHTGEKPYSCKNCKIRFGTKCQLKLHAVIHTGEKPFSCDTCQNKFARKGDLKRHSVVHMSEKPYSCDSCDKKFATISHLKLHALTHTGDNPYSCGSCQAKFARACDLNRHLVVHVVEKPFSCDSCEMKFATDSLLKSHTLVHIFEKPYSCDICPTKYARLSDLKKHKVAHIGEEPHQYHTIFQSQFTSEGNLNRHSVVNIGEKLDSCDVVFQKKLARKSYFNKCKGNHRDEKPDNCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -