Carg001742.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994579.1:22001288-22009122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.16 16 6.8 2.9 1 23 190 213 190 213 0.87 2 12 0.0076 0.78 11.0 3.2 1 23 223 245 223 245 0.96 3 12 6.7e-06 0.00069 20.6 1.2 2 23 253 274 252 274 0.96 4 12 0.0063 0.65 11.2 0.2 6 23 284 301 283 301 0.99 5 12 3.8e-06 0.0004 21.3 0.4 1 23 310 332 310 332 0.98 6 12 0.0057 0.59 11.3 0.6 6 23 342 359 340 359 0.97 7 12 3.9e-05 0.004 18.2 7.1 1 23 365 387 365 387 0.96 8 12 1.6e-06 0.00017 22.5 0.7 1 23 393 415 393 415 0.98 9 12 5.1e-07 5.2e-05 24.1 1.3 1 23 421 443 421 443 0.99 10 12 6.6e-05 0.0068 17.4 1.1 1 23 449 470 449 470 0.97 11 12 0.0067 0.69 11.1 0.3 1 23 476 498 476 498 0.94 12 12 7.2e-05 0.0074 17.3 1.8 1 21 504 524 504 526 0.96
Sequence Information
- Coding Sequence
- ATGAATGATACCAAATCTGATGTGAAAAACTTAACACCTGCGGTAGATTTAAAAAAGGCATGCCGAGCGTGTTTAAGAACACCGAAAAAAAACATGGACTCACTATTTTCCTCGCATAAAAAAGAAATGTTATCCGATATGTTTCTAGACATAACTTCTGTTAAAATTGAGCCGGACGAAAATTTACCACTGCAAGTATGTTGCTCATGCCGTCAACAACTTATAAAATCATATAAGTTTAGATTAAAGTGCCTGGAATCTGATAGTCATATAAGGTCTACTATTGGTACAGAGAAGTTTTTAATAGATACTTCAGAGCTAAGGTCAGACTCTTTAGACAATATTATAAATTGTAAAAATAATGACGACAAAAAAGAAAAGGATGAATGTCAAATTGAAATAAAGATAGAGGATCATGAAGAAATAGAGTATTTGGATGATGAAGTTTTTAGTGCAGAGAACAAATATTTAATGCAAAGCGAGAATATGATAAGTTCAGAAACCAATAAAAAAAAACCAAAGAAAAATAAGTCAAACAAAACAAAGACCAAAAAAGATGAAAACATGTTTGAATGCGAAGTTTGTTCTAAGAAATTTAAGAAAATAACCATGCTGAATTTTCACTTCAATAAATACCACATGCAGCAGGAGAATACAGATCTATTGTTCCCGTGCGAGCACTGCAAGGAGTCTTTGAGCTCCGAGCATGATCTGCACCTACACCAGGCTCTGCACACACCTGTTGACAATGTGTGGATGTGTAACAAGTGCCAGAAAACATTCAAAGTGCGCGGCGCGCTACGTCGCCACGTGCGCTACCACATGGAACACAAGCGTCACGCGTGCGCATGCGGCAAAACGTTCGCGGAGCGGTGCGCGCTGCTGCGACACGCGCGCGTGCACACCGGCCAGCGCGCGAGTAAGAACTACGTCTGCGAGTATTGCGACAAGAGGTTCATAGACCGCGCGGCGCTGTGCGCGCACGTGGCGCGGCACACGGGCGAGCGCGCGCACGCGTGCAGCTGCGGCGCGGCGTTCCGGTCGGCGCGCCTGTTGCGCTCGCACCGCCGCGTGCACGACGACAGCCGCCCGCACGCCTGCACCGTGTGCCACAAGCGTTTTCGCCACGCGTCGACGCTGCGCACGCACGCGCGCACGCACTCCGGCGAGCGGCCGTACGTGTGCGCGGCGTGCGGCAAGAGCTTCATACAGCACTCCAACCTCACGCTGCACGCGCGCACGCACACCGGCGAGAAACCGTACAGCTGCGATTATTGCGGGCGCAAGTTCACGTCGGGCTCGGCGCTGAACTCCCACCGGCGCACGCACACCGGCGAGAAACCCTACTGCTGTCCCATCTGCGGGAAAAGATTCGCACGCGTGGACATGACGGCGCACATGCGGCGGCACTCGGGCGAGCGGCCGCACGCGTGCGCCGCGTGCGGCAAGCGGTTCGCTACCGCCGCGCGCCGCACGCAGCATATGCTCGTGCACAATGCTAAAAAGTCATACGAATGTCCCGTGTGTGCTGAGAAGTTCAAACGGAGAGGGTACCTCGCTCGTCACATGAAATGCCACGACACGGCGCCGAGCAACCGGGTGTCGGTCTTACAGCTAGCGCCTCCTCGGGAGAATGTCATTGTAGCTAACTACTCAATAAAAAATCAGGAGCCAGTTGCAAGTGAGAGGTGCGAAGCTATGCCGGAGTATCACCAAGACCTGCATTTAGATGTATCGCAGGAGTTCATCTTAGATGACAGCAACGTTAGAAACGAGGTGGTTGTCGTCGACGACGGCTCCCAAATCGCTTATGAAAACGAGGATGTATATTTAGAGTCACAGGAAATACAGTACGATCGGACCATGGACCTACACGCCGAAAACCTATCGGAATCAGAATTAGACGACCCCGGGATGTACGTAGACCGAGGTTATATGGAAATAGAAACTGTAGACGGGGAATTAATGATTAGCAAAATAAAAAGAGAATGA
- Protein Sequence
- MNDTKSDVKNLTPAVDLKKACRACLRTPKKNMDSLFSSHKKEMLSDMFLDITSVKIEPDENLPLQVCCSCRQQLIKSYKFRLKCLESDSHIRSTIGTEKFLIDTSELRSDSLDNIINCKNNDDKKEKDECQIEIKIEDHEEIEYLDDEVFSAENKYLMQSENMISSETNKKKPKKNKSNKTKTKKDENMFECEVCSKKFKKITMLNFHFNKYHMQQENTDLLFPCEHCKESLSSEHDLHLHQALHTPVDNVWMCNKCQKTFKVRGALRRHVRYHMEHKRHACACGKTFAERCALLRHARVHTGQRASKNYVCEYCDKRFIDRAALCAHVARHTGERAHACSCGAAFRSARLLRSHRRVHDDSRPHACTVCHKRFRHASTLRTHARTHSGERPYVCAACGKSFIQHSNLTLHARTHTGEKPYSCDYCGRKFTSGSALNSHRRTHTGEKPYCCPICGKRFARVDMTAHMRRHSGERPHACAACGKRFATAARRTQHMLVHNAKKSYECPVCAEKFKRRGYLARHMKCHDTAPSNRVSVLQLAPPRENVIVANYSIKNQEPVASERCEAMPEYHQDLHLDVSQEFILDDSNVRNEVVVVDDGSQIAYENEDVYLESQEIQYDRTMDLHAENLSESELDDPGMYVDRGYMEIETVDGELMISKIKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -