Carg017490.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- zbtb8a.1-b
- Assembly
- GCA_905187575.1
- Location
- LR994592.1:416900-418330[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0038 0.39 11.9 0.0 2 23 158 179 157 179 0.97 2 11 0.00036 0.038 15.1 2.2 1 23 185 208 185 208 0.93 3 11 2.1e-06 0.00022 22.1 0.9 1 23 215 237 215 237 0.98 4 11 5.5e-05 0.0056 17.7 3.1 1 23 243 265 243 265 0.98 5 11 0.00022 0.023 15.8 0.1 1 23 271 293 271 293 0.97 6 11 9.3e-05 0.0096 17.0 2.6 1 23 299 321 299 321 0.98 7 11 5.2e-07 5.3e-05 24.1 0.6 2 23 328 350 328 350 0.97 8 11 0.00088 0.091 13.9 1.0 5 23 356 374 355 374 0.85 9 11 0.00024 0.025 15.7 1.6 1 23 380 403 380 403 0.93 10 11 0.0017 0.17 13.0 0.5 1 23 409 433 409 433 0.97 11 11 4.6e-06 0.00048 21.1 1.6 1 23 439 462 439 462 0.98
Sequence Information
- Coding Sequence
- ATGGAATCACTAATATGTAGAATATGCCTCGACAAACCGGGCACTGTATCTCTTTTCGACAAGGAGAATAACATTCAATACAGTACAAAGTTAATGCAGTTTGTCAACATCGTTGTTGCCGAAGACGACGGTTTGCCGGGTATGCTCTGCAGCGGATGTGTCGAGGAGCTCAGTCTGTCCTATCAGTTTGTGCAGAAATGCGAAGCCTCGGATAGAGTGCTTCGTTGTATGAGCTCACCCAACGATCTATTCACCGATATCGAAGCAAAAGTCACATTAGACATCAAGTACGAGGACTTGGAAGAGGAATTTGAAGCTACAAATAGACAGGATAGCCTAGACGGTGACTACTTCTTCGACAGCTCCGAAAAGACTTCCTGTGAACAAGAAGATGATACAAAGAGCGAATCGAGTAAACGGAGCAAAGGGAAACGTCGCAGGAAAAGGATTAACTCCAAATTGGGCAAAGTTCGATGCGGAGTGTGCGGGCTGGTGGCAGCGAGCCGGTCGGCGATGGACACGCACATGCGCGTGCACACAGGGGAGAAGCCCTACGCCTGCAGCTGCTGCGGCAAGCGGTTCCCCACCAAGGGAGCACTAAAGAGACACAACGAAACCTTTCACCTGGAGAGAGAAAGAAAATACATGTGTGAGCTGTGCGGCAACAGTTTCTACAGAAAGAGTGACATACGAACTCACATGAGAGTACACACCGATGAAAAGCCCTATCCCTGTATGTACTGTACAAAGCAGTTCCGACAAATCTCTTCCAGGAATCGACATCAAAGAACTCACACTGGCGAGAAGCCATTCGCCTGTCCTATATGTGATATGAGGTTTGGAGAAAAGGTTCAAGTGCGGAGGCACCAGGCTGTACACAGCAATGAGAGAAAATTCAGCTGCCACCTCTGCAGCAAGACCATGAAGACTCGATCTGCTCTCACTGCTCACTTGAGGCTTCATAGAAACGAGAAACAAAATGTGTGCAGTTTTTGTGGCAAAACTTTTGCTTTGAAAGGTAATTTGCAAACTCATATGCGAAGAGTCCACTCCGAGGCCTCGGGCCAGTGTTCGGTGTGCCTAAAGACATACTCAAATCTCAAGGCACATATGAGAAAACATACAGGAGAAAAGCCATATGAATGTTCCAAATGTGATGCAGCATTCTCTGTCAAACGGAGCCTGACGCACCATGTGTTGTTCAAGCACGAAAACACTCACAAGTACAAGTGCTCAGTGGGAGAGTGTACGAAGACGTTTCCAAGAAGTGTAATGCTCGAGTTCCATCTACTGAAGCACACAAACCACACACCATACGTCTGTCCGCACTGCTCCAGGGGCTTCTTCAGGATGAGTGACCTGTCTCGGCACCTGAGGGTCAGTCACATGGATGTGCAAGTCAAAAATACTGTTAAAACTGTGATTGTGTAA
- Protein Sequence
- MESLICRICLDKPGTVSLFDKENNIQYSTKLMQFVNIVVAEDDGLPGMLCSGCVEELSLSYQFVQKCEASDRVLRCMSSPNDLFTDIEAKVTLDIKYEDLEEEFEATNRQDSLDGDYFFDSSEKTSCEQEDDTKSESSKRSKGKRRRKRINSKLGKVRCGVCGLVAASRSAMDTHMRVHTGEKPYACSCCGKRFPTKGALKRHNETFHLERERKYMCELCGNSFYRKSDIRTHMRVHTDEKPYPCMYCTKQFRQISSRNRHQRTHTGEKPFACPICDMRFGEKVQVRRHQAVHSNERKFSCHLCSKTMKTRSALTAHLRLHRNEKQNVCSFCGKTFALKGNLQTHMRRVHSEASGQCSVCLKTYSNLKAHMRKHTGEKPYECSKCDAAFSVKRSLTHHVLFKHENTHKYKCSVGECTKTFPRSVMLEFHLLKHTNHTPYVCPHCSRGFFRMSDLSRHLRVSHMDVQVKNTVKTVIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744972;
- 90% Identity
- -
- 80% Identity
- -