Carg024626.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994598.1:2049732-2053249[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.4e-06 0.00025 21.9 1.4 1 23 171 193 171 193 0.97 2 13 0.00011 0.012 16.7 0.2 1 23 199 221 199 221 0.98 3 13 2.9e-05 0.003 18.6 2.8 1 23 227 249 227 249 0.96 4 13 0.00025 0.025 15.6 0.5 1 23 258 280 258 280 0.98 5 13 5.7e-05 0.0059 17.6 0.7 1 23 285 307 285 307 0.99 6 13 1.8e-07 1.9e-05 25.5 1.2 1 23 313 335 313 335 0.98 7 13 0.00047 0.049 14.8 3.6 1 23 341 363 341 363 0.97 8 13 1.7e-05 0.0018 19.3 1.3 3 23 371 391 369 391 0.98 9 13 0.00011 0.011 16.8 4.3 1 23 397 419 397 420 0.96 10 13 0.0001 0.01 16.9 1.6 2 23 430 451 430 451 0.98 11 13 0.00012 0.012 16.7 6.0 1 23 457 479 457 479 0.97 12 13 3.1e-05 0.0032 18.5 1.8 1 23 482 504 482 504 0.98 13 13 0.00093 0.096 13.8 0.9 1 23 510 533 510 533 0.98
Sequence Information
- Coding Sequence
- ATGATGAATTATAGTGAAGACACCTGCTTCTTGTGTTTTGCTAGTAAAACCAGAGTTATTTTAATAAAAAATACTCGTTTACAAAGCCTACATGAAGATCTAACTAGTCTAATGATACAATCTGAGTTTTACCCGCTGTGCTACATTTGCTATAAGAGATTACTCCAATGTGAACAGTTGGTCAAACAGATCCAAGAACTAAAAACTGCTGATAATGAGAGGGAAGAAAGACAGCTAATCCGGCTGTCAGTATTAAACAACTATATAGAAATGCCTGAAGACCTATATACATTGGTGCCTGTTATTGAATATGTACAAGTTAAACAGGAATGTTTGGATGAGGATGTGAGCAATAATAGACAAACACACAACTTGTTTCACACTGTTCCTGTAGATATTAAAATAGAACATTCGGAGACTGGTGAGGAACACTTTGAAGATGAGGCGGCAACTGAACTGACTGTAGACTACTATGCTACGGAGGCATCACAGACAATGCACAATAAGCCCTATAGCTGCGATATGTGTAGCAAAAGTTTTACCACAAAGGGCTATTTGAAGGTGCACAAATTAATACACAGTGGTGTTAAACCGTTCAGTTGTGAAGTGTGTAGTAAAATGTTCGCTCTGAAAGAAGTTCTACGGGGACACATGAGAATACACAGTGGCGACAAACCGTTTGATTGTGATGTGTGCAGTAAAAAATTCAGTTCCAAATTTAGCTTAAGACGACACAAAACGATCCACACTGGTGAAAAACCCAGCAAGGATTTTAGTTGTGACGTTTGTAGTAGGAAATTTAATTCGGCCAGCGGTGTGGAGAATCACAAAAAAATACACGGCGTCAAGTCCTTCACTTGTGACATTTGTAGTAAAGCGTTCTCGCTGAAAGGTATTTTGAGGTTGCACATGAGGAAACACACCGGCATTAGACCCTACAGCTGTGACGTTTGTAGTAAAATGTTCACACAGAAAAGTAATTTGGAAGATCACAAAAGAATACACAGCGGCGTTAGACCGTTCGCTTGCGACATGTGCAGCAGGAAGTTTACCCTGAAATGCAACTTGGAGTCTCACAAAAGAATACATAACGGCATCAGACCTTTCGGTTGTGACGTTTGCAGTAAACAATTCACGTCAAAGAACAACCTGGAAGTGCACAAAAAGACTCACAGCGGCATCAAACCTTTCAGTTGTGACGTTTGCAGTAAGACATTCATTACGAATTATCGTTTGAAAACACACAATCGTATGCATCACGCCGACAGTGAGACGGTAAAGATAAACAGATGCGATGTTTGCAGTAAAAATTTCTTCTCCAATTGGAGTTTGCAAATACACAAACGAACACACAGCGGCGATAAACCGCACAGCTGTGACACTTGCAGTAAGAAATTCCACGACCCGAGGAGTTTGAATAGACACCTGAAAACTCACAATCCTTACACTTGTGAGATTTGCAATAAAAAAATTACTCGACTCCAGAATTTTAAGGACCACATGAAGTTGCATACTAATGATAGACCGTATAGCTGTGATGTTTGCAATGCAAAATATGTAACGAAAAATAGATTGTTAAAACATGTACAAACTTATCACTTGGCGAGCTAA
- Protein Sequence
- MMNYSEDTCFLCFASKTRVILIKNTRLQSLHEDLTSLMIQSEFYPLCYICYKRLLQCEQLVKQIQELKTADNEREERQLIRLSVLNNYIEMPEDLYTLVPVIEYVQVKQECLDEDVSNNRQTHNLFHTVPVDIKIEHSETGEEHFEDEAATELTVDYYATEASQTMHNKPYSCDMCSKSFTTKGYLKVHKLIHSGVKPFSCEVCSKMFALKEVLRGHMRIHSGDKPFDCDVCSKKFSSKFSLRRHKTIHTGEKPSKDFSCDVCSRKFNSASGVENHKKIHGVKSFTCDICSKAFSLKGILRLHMRKHTGIRPYSCDVCSKMFTQKSNLEDHKRIHSGVRPFACDMCSRKFTLKCNLESHKRIHNGIRPFGCDVCSKQFTSKNNLEVHKKTHSGIKPFSCDVCSKTFITNYRLKTHNRMHHADSETVKINRCDVCSKNFFSNWSLQIHKRTHSGDKPHSCDTCSKKFHDPRSLNRHLKTHNPYTCEICNKKITRLQNFKDHMKLHTNDRPYSCDVCNAKYVTKNRLLKHVQTYHLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -