Carg000344.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994600.1:9501727-9536965[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0014 0.14 13.3 0.4 1 23 457 479 457 479 0.97 2 18 9.3e-06 0.00096 20.1 1.5 1 23 493 515 493 515 0.99 3 18 0.00021 0.022 15.8 2.0 1 23 521 543 521 543 0.97 4 18 1.2e-05 0.0012 19.8 2.6 1 23 550 572 550 572 0.99 5 18 2.6e-05 0.0027 18.7 0.2 1 23 578 600 578 600 0.93 6 18 7.6e-07 7.8e-05 23.5 0.1 1 23 606 628 606 628 0.98 7 18 2.7e-05 0.0028 18.6 2.4 1 23 634 657 634 657 0.96 8 18 0.0016 0.16 13.1 1.9 1 23 663 686 663 686 0.93 9 18 0.00034 0.035 15.2 0.3 2 23 693 714 692 714 0.96 10 18 2.2e-05 0.0023 18.9 1.3 1 23 720 742 720 742 0.97 11 18 0.00076 0.079 14.1 0.2 1 21 748 768 748 769 0.96 12 18 0.00076 0.079 14.1 0.2 1 21 823 843 823 844 0.96 13 18 0.12 13 7.2 0.0 1 17 898 914 898 915 0.92 14 18 0.00076 0.079 14.1 0.2 1 21 925 945 925 946 0.96 15 18 0.0011 0.12 13.6 0.8 1 21 1008 1028 1008 1033 0.95 16 18 0.00076 0.079 14.1 0.2 1 21 1041 1061 1041 1062 0.96 17 18 0.0072 0.74 11.0 0.1 1 21 1135 1155 1135 1156 0.96 18 18 0.00049 0.05 14.7 0.3 1 22 1210 1231 1210 1234 0.92
Sequence Information
- Coding Sequence
- ATGAATTGGACTCGACGCTGTTTCATATGCAACCAAAATGCATATGTTATGAAAGGAGGAGCTGAGATCTTTGACAATAAGAAACCCCTTAAGTCTGGCAAGGAATTGTCTGCAATAATCAGTGACCTTGTACAGAAACCTGTGACTCAGGATCTGGCACATTCTAATGTGCTGTGCAGCAAATGTAACAAAATGGTTCTGGAATATGATTTACTGGTTGTCAGATGTCAGAAAATAGAAAAGGATGTAATGGAATTGTTTAAGCAGACACTGAAGAAGTGGGAAGCGAAGTATGACACTTACTCCACCGACACAGTGAAAGCGGAGAGCGTACAGGTTTCTGAGCAACCGGTCATCATAACACGAACTAAACCAGCCAAGGAGACGGAACCGATGAAAAGGGTGGATCCGAAGAAGATTGTGCTGTCTGCGTCTAAGTTGCAACCACTTCCTCCGGACTTTGTGCTCAAACCCAACATTATCCCTGATGTACGGAAGAAGGTCAATTTCCCGATTGTTACCAAGTTGAAGCCCATATCATTAGAAGACACAAATCAACAAACCAAAATAAAGATTGAGATGGACAAGGATATTATCGATAAAATGGAGATGGAGGAAGATCAAGGGAAGAATGACCTGGCTTCGCTGTTGAAATTCAACGAGACCAACCTGCACAACTACTCGCTGAGTGCGTACAGTGTCAAGGAGAGGAATTTGAAGCTGGAGGGCTTGCTGAGTGACGGCGAGAACGCTGATGCTGATGAGAGCCCCATGGAGATTGATGAAGACTGTACACTCACCGAGAGCAACCTGGACAGCAGTTTACTGGGCATAGAGACAACCGGCGGGTTCGTGCGGCTGATGCCCGCTGAGGACGTGGTGAAGCTGCAGCTGCAGGACGACAAGAGTGATGATGATGGAGAAGGACATACAATAGTGATGGATGAGAACGGTTCCATACTCCGAGTGGTCTCCGGGCAGAGGTTCATGATCGGTGACCAGGAGATATCGCTGGTGATGCCTGATGCTGCGGAGGGGCTGGGCGACAGCCAGGATTCCAACGACGACTCGCAGATAGAGCTGCAGGTGTCCGGCGACGAGGAAACTGCCAACGCCATCATCGCCGCCGCGCAGGAGAAAGGGGGTGCGTTCATAAAGGTGGAGTCAGGTGAGATGTATCGGGTGGAGTCTGTGGAGAGCAAGAGCGACAGTGATGACGGATCAGACATACAGTTTCAGGTGGAGAAGAAAGATGACGGGCTCTTTCGGTGCAAGTTCTGCGAGCGGTACATGAGCGCTGACAAGGTGTTCGAGGGCGACGCGAGCGCGATGACGTCACACCTGCGGGCGCTGCACGACGCGCGCCTGTACATCTGCGCCGTGTGCGGCAAGTTCATACGCCGCAAGTCCGAATACGGGAAGCACCTGAGCAGCCACAGCTCGGGGGAAAGCGCTGTACTGGACAAGGGCAGGACGTACGAGTGCAACGAATGTCACAAGCAATTCACGTCGCGCGTGTCGCTCGCGGAGCACGTGAACACGCACGCGGGCGCGCGGCCGTACGTGTGCGCCGATTGCGGGAAGGACTTCGCCAACAAGTACACGTATCAGGCGCACTGCAAGACGCACACGAACCGCCCTCGTCCGTTCAAGTGTAATCAGTGCGAGAAGTCGTTCTTCACGCAGCAGAACCTGGCGCAGCATGAGAAGACTCACTCGGGCATCAAGGACTTTATATGCAAGATATGCGACAAGGCGTTCGGTACGCAGCACAACCTTGAGGTGCACGGCGTCGTCCACTCGCGCCGCAAGCCGTTCTCGTGCGGCGACTGCGGAAAGGCGTTCGCGCGCCGCGCCGAGCTGCGCGACCACGTGCGCATACACACCGGCGAGCGACCGTTCGAGTGTGAGATCTGCCACGCGCGGTTCACGCAGCGCTCCAACCTCTACTCGCACCGCCGCGCCACGCACACGGACGACAAGCGGCACGCGTGCGACCGCTGCCCCAAGCGGTTCAAGCGCAAGCGGCTCCTCGACTACCACATCCAGGCGTCCCACACCGGCGAGCGGCCGCTCACGTGCGCGGTCTGCGGCGCCAAGTTCGTCTACCCGGAGCACTACAAGAAGCACCTCCTGATACACAGCGGCGCCAAGCCCTACACGTGCGAGATATGCGGCAAGTCCTTCAACTCGCGGGACAACCGCAACATGCACCGGTTCGTGCACAGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGCGGGTGAGTGCCTACCTACCGCTCCAGCACAGTGAACCACGTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGTGGTGAACCACGTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGCGGGTGAGTGCCTACCTACCGCTCCAGCACAGTGAACCACGTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGCGGTGAACCACGTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTCAGAGTGAACCACGTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGTGGGTGAGTGCCTACCTACCGCTCCAGCAGAGTGAACCACGTGCACTGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGCGGTGCCTACCTACCGCTCCAGCAGAGTGAACCACGTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCACAGAGTGAACCACGTGCACGGCGACCGCAAGGCGTATGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGCGGGTGAGTGCCTACCTACCGCTCCAGCAGAGTGAACCACGTGCACGGCGACCGCAAGGCGTACGCGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGCGGTGCCTACCTACCGCTCCAGCAGAGTGAACCACGTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCATGAACCTGCTGTACAACCACATGAACCAGCGGGTGAGTGCCTACCTACCGCTCCAGCACAGTGAACCACTTGCACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCATGAACCTGCTGTACAACCACATGAACCAGCGGTGAACCACGTGTACGGCGACCGCAAGGCGTACGAGTGCCTCGTGTGCGGCGCCAGCTTCATGCGCAAGAACCTGCTGTACAACCACATGAACCAGCGGGGTCACATGGCGGAATCCATAGTCATCAACCAGCCCCGCATCGCTATACGGTCTGAGTGTGAGAATTCAAAGGACGATGCAAACATTGAAGAGGCAGGAACGATTTACGAGCAAACAGAAGTTGCTGACTCAGCCGAGAATACGATAGAGAAATCTTTCAACATTGCTCAAGATGGAGATGCGACGTTGCTGGCTATACACAACGCGGACGGTGAATTGAAAGCCGATGAGAGTTTGCTGCAAACATTTTCTGTGGAACAGCTGGACCAGTCCATGTTGCCTGAGAACGTGTTGGTGACCACGGAAGGCGAGCAGCGCCCGGTGATGCGGCTAGTGCAGCTGCAGCTGCGCGACGGGAACAGCAAGTGGGTGGCCGTGGACGGGTAA
- Protein Sequence
- MNWTRRCFICNQNAYVMKGGAEIFDNKKPLKSGKELSAIISDLVQKPVTQDLAHSNVLCSKCNKMVLEYDLLVVRCQKIEKDVMELFKQTLKKWEAKYDTYSTDTVKAESVQVSEQPVIITRTKPAKETEPMKRVDPKKIVLSASKLQPLPPDFVLKPNIIPDVRKKVNFPIVTKLKPISLEDTNQQTKIKIEMDKDIIDKMEMEEDQGKNDLASLLKFNETNLHNYSLSAYSVKERNLKLEGLLSDGENADADESPMEIDEDCTLTESNLDSSLLGIETTGGFVRLMPAEDVVKLQLQDDKSDDDGEGHTIVMDENGSILRVVSGQRFMIGDQEISLVMPDAAEGLGDSQDSNDDSQIELQVSGDEETANAIIAAAQEKGGAFIKVESGEMYRVESVESKSDSDDGSDIQFQVEKKDDGLFRCKFCERYMSADKVFEGDASAMTSHLRALHDARLYICAVCGKFIRRKSEYGKHLSSHSSGESAVLDKGRTYECNECHKQFTSRVSLAEHVNTHAGARPYVCADCGKDFANKYTYQAHCKTHTNRPRPFKCNQCEKSFFTQQNLAQHEKTHSGIKDFICKICDKAFGTQHNLEVHGVVHSRRKPFSCGDCGKAFARRAELRDHVRIHTGERPFECEICHARFTQRSNLYSHRRATHTDDKRHACDRCPKRFKRKRLLDYHIQASHTGERPLTCAVCGAKFVYPEHYKKHLLIHSGAKPYTCEICGKSFNSRDNRNMHRFVHSDRKAYECLVCGASFMRKNLLYNHMNQRVSAYLPLQHSEPRARRPQGVRVPRVRRQLHAQEPAVQPHEPVVNHVHGDRKAYECLVCGASFMRKNLLYNHMNQRVSAYLPLQHSEPRARRPQGVRVPRVRRQLHAQEPAVQPHEPAVNHVHGDRKAYECLVCGASFMRKNLLRVNHVHGDRKAYECLVCGASFMRKNLLYNHMNQWVSAYLPLQQSEPRALRPQGVRVPRVRRQLHAQEPAVQPHEPAVPTYRSSRVNHVHGDRKAYECLVCGASFMRKNLLYNHMNHRVNHVHGDRKAYECLVCGASFMRKNLLYNHMNQRVSAYLPLQQSEPRARRPQGVRVPRVRRQLHAQEPAVQPHEPAVPTYRSSRVNHVHGDRKAYECLVCGARKAYECLVCGASFMRMNLLYNHMNQRVSAYLPLQHSEPLARRPQGVRVPRVRRQLHAHEPAVQPHEPAVNHVYGDRKAYECLVCGASFMRKNLLYNHMNQRGHMAESIVINQPRIAIRSECENSKDDANIEEAGTIYEQTEVADSAENTIEKSFNIAQDGDATLLAIHNADGELKADESLLQTFSVEQLDQSMLPENVLVTTEGEQRPVMRLVQLQLRDGNSKWVAVDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -