Carg003287.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994591.1:1096955-1104488[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.2e-10 4.2e-07 30.2 0.0 2 39 157 195 156 199 0.90 2 4 2.1e-11 1.4e-08 34.9 0.1 1 39 210 248 210 251 0.94 3 4 2.2e-14 1.5e-11 44.5 0.3 2 45 266 309 265 309 0.96 4 4 9.5e-18 6.4e-15 55.2 0.0 2 43 317 359 316 361 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTCACGACTTGAATTCAATAAAATGTGAGCCAACAACTGAAGATGATAGCCAGCCCACCGCGCTAGACATGTGGTATCGCGCGGAGTCAAATCTGCAGAGACACGACAATCCATCATCACATTTGTTGCAACAGTTGCACGGTAACCTGGACGAGCTGGCCCCCGCGCCGGCCGGGCCCGCCGCGACGCCGGTTGATGAGCACCAGCCGTCGCCAACGGAGGCATCGCTGGCGACGTTGCAGCCCGCACCAGTAGGGAACACTATGGGCACGTCAATAATCGACATGCACGTGAAGATGATGAATGTAAAGGAAGTGGCCGACTCCGCTGACTTTGTGCCGCTGATGGCGGTCAAAGAGGAACAGACTTCTGAGGGTGAGCAGCAGCAGAGCAGCGACGACACGAGCGACTCCGCCCCGGAGCATCCCACCGTTGGTCGCGGGAGCCCTAAGGCGTGGTCGCCGCAGGACATGGACAGTGCCCTCGAAGCGCTGAGGTCACACAACATGACCCTGACGAAGGCGTCAGCGACGTTTGGAATCCCGTCCACCACGCTCTGGCAGCGAGCGCATAGACTCGGCATAGACACGCCGAAAAAAGATGGTGCCTCGAAATCCTGGAGCGAGGATGACTTGAAGATGGCGCTGCAGGCGCTGCGGGCGGGGACTATATCCGCTAACAAGGCGAGCAAAGCTTATGGCATCCCCAGCAGTACCCTGTATAAGATCGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGGCGTGCCGACCTCGCCCGCGCGCTCGCCGCCGTGCGCGCCGGCGCGGCCGTGCAGCGCGCCGCCTCGCACTACGGCATTCCCACCGGAACTCTGTATGGAAGGTGCAAGCGAGAGGGGATAGAGCTGTCCCGCTCCAACCCCACGCCGTGGTCAGAGGGTGCTATGGAAGAGGCGCTGGAAGCAGTAAGGGTCGGTCAGATGTCGATCAACCAGGCGGCAATCCACTTCAACCTGCCCTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGGTGCCGCAGGACATCCGACCACAAAACCCCATGGACTTTTCTGAACAAGTACTGGACGATCGCCAGTTTTCCTCTGATATGAATACATTGGACGACTTACACCGGACGTATACACTTGCGGACGTACTCGAAGGCGTACAGTCGCGTACACATGCCGGCGTACAGTCTCCACCAGACGATTTACGTACGCTAGACGAAGTACCCGTACACTCGCGGATACAAGCGGACGCACGGTATCCGCTAGATGGCGTTGACTTGCCTCAACACGAGGTACAATCGCGAACACAATCTCTACACTCTACCGCGCTAAATGTACACTCGCGGACACAAGACGTACAGCAAGTCAACGAAGTACAGTCGCGAGCAGAAGTGGCTGTACACTCGCGAATACAAGCGGACGCACAGTATCCGCTAGAGGGCGTTGACTTGGCGCAACACCAGGTACAATCGCGAACACAATCTCTACACTCTACCGCGGTAAATGTACACTCGCGGTTAGAATCGGACGCTCAGTATCCGCTGGATGGCGTTAATTTGGCGCCAAACCAGATACAATCGCGAACACAATCACTACGTCGAGGAGAAGAGGTACAGTCGCGAACAGAAATGCCTATACTAGCTGACGCACAGTATCCGCTAGATGGCGTTGACTTGGCGCGAAGGCAGGAACAATCGCGAGCACTTCCCCTAGATATGCACACGCGGACACACGACGTGCAGCAAGTACATGAGGTACATTCGGGTACAGAAGTGCGTACGTTCAGCGGCGTGCGGCAGGCCCCGTACGCGCTAGCGTACTGCATCGCCAGCTGA
- Protein Sequence
- MPGHDLNSIKCEPTTEDDSQPTALDMWYRAESNLQRHDNPSSHLLQQLHGNLDELAPAPAGPAATPVDEHQPSPTEASLATLQPAPVGNTMGTSIIDMHVKMMNVKEVADSADFVPLMAVKEEQTSEGEQQQSSDDTSDSAPEHPTVGRGSPKAWSPQDMDSALEALRSHNMTLTKASATFGIPSTTLWQRAHRLGIDTPKKDGASKSWSEDDLKMALQALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAVRAGAAVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQVPQDIRPQNPMDFSEQVLDDRQFSSDMNTLDDLHRTYTLADVLEGVQSRTHAGVQSPPDDLRTLDEVPVHSRIQADARYPLDGVDLPQHEVQSRTQSLHSTALNVHSRTQDVQQVNEVQSRAEVAVHSRIQADAQYPLEGVDLAQHQVQSRTQSLHSTAVNVHSRLESDAQYPLDGVNLAPNQIQSRTQSLRRGEEVQSRTEMPILADAQYPLDGVDLARRQEQSRALPLDMHTRTHDVQQVHEVHSGTEVRTFSGVRQAPYALAYCIAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -