Clyc000721.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01000054.1:1-23565[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.059 4.7 8.5 0.3 1 23 501 524 501 524 0.93 2 11 0.16 13 7.1 1.5 1 21 657 677 657 678 0.91 3 11 0.031 2.5 9.4 3.8 2 23 738 759 737 759 0.95 4 11 0.2 16 6.8 0.7 1 23 771 795 771 795 0.91 5 11 0.00033 0.027 15.6 0.3 2 23 802 825 801 825 0.96 6 11 0.022 1.8 9.8 0.3 1 23 831 853 831 853 0.94 7 11 1.5 1.2e+02 4.0 0.7 1 10 883 892 883 892 0.94 8 11 0.0019 0.15 13.2 3.3 1 23 962 984 962 984 0.98 9 11 1.1 91 4.5 0.0 2 19 995 1012 994 1015 0.85 10 11 0.0073 0.58 11.3 0.2 1 23 1094 1116 1094 1116 0.96 11 11 0.35 28 6.1 1.1 1 14 1123 1136 1123 1137 0.90
Sequence Information
- Coding Sequence
- ATGGGGAAATCTCCGGAACCATTGATTCTTTGCTTGGAGAACACAGAAGGAGAAGAAGTTTCCATTGCAATTGAGTCCAATGACAATTTCCAAATGTTTTTGGATAAGgctaaATCTTTACTCGGTTTTGACATAGATTTGAATTCAATAACCAATAACCAACCAGTGGCACTAACGgataatatatatgattttttgataAACACAGAACGCAATGCCAATGAATTAAGTAACGAAACATTTGACCAAATGTTGGAGCCAAGTGCCACTGATGATTTGGTTTACGTACTAGATGATGGCACTCAAATTAAAGCGTCACAGATACATTTTGATAACGAGGATCCTCCGGTTGATTTAACAGCGGAGGAAATTCCCTTCGTTAAGTACGCAGATAgttctgatgatgatgataaaaacGCCTCAATTGAAACCACCAAAAAGATTAACATTGTTGAAAGTCCTGTCGCTAAATGGTCAAGTCAGCATCCAAGTCCCAAGTGTAGTTTTATCAATAGCCTCCCATTCAAGCTCGTCTGTAATAATACCTCTAATTTCGAAGCCCAATTCACGAAGTATCTCGAATCTAGTACCAAAAATCCAACACCGAGTttcaattatgataaaaatgttacaaggaAAGATGATTTCAATTTGACTAGAGAGGATATTCTTAATATGTTCAAAGATGCTCCTGTAACGTCTGTACCGTATGACGAAACAAGTTTGAGCGATAAACGGAAACATGTACGGAAAACAGACCCGACAAGACTCGTGCATAAGACTTGGAATTCCAAACCGTTGTCATGTGTCGTGGATAGCCACAGCGAAATGTGTTTTATATGCAGAAAGTTTGTGGATAGAAATCTAGAAAAGCTCTATTTATTTGACAATGAGGATCAAAAATTGCATCGTTGTTCGCCACAACGGCGATACTCAACCCAACTCAAAATCCTATGCGAGCAATGTTTGGCTGAAAATTTCAAACCCTGTTCCATGAAAAGTCCGAGTCAGTCTCTGAAATCCGACGAATACTTGATCATCAAAAACAATCAGCAGTACATCTTCAAGAAAGTTACTTCGATCAATCTGAAGGACTGCGATAACGATTTCATTCTTCCTGATGATCGGAAAGGTAGAGATACTCATACATTCATAACAGACAAACAAGGAATGGACTACgttaagatagaaataggttcTGACGGAGAAATAGTAACCAAGTCGCTTTACGATGACCCGAGATCAGATGATGTTATAATTGTGAAAGACGAAAATAAAGACAGCTCGAGTGACGTAGAAATCATTGAACCTGATGATTCTGTTATCGAGAATTTGGATGATTGTGATGAAGATGTTAAAGAATTTCTGGGGAAATATCAGTGTGATAATAACGATTCGGTGGAACTTAAGTGcagATTCTGTGACCaaatcttcgaaaatattccaGAAGTGATAGAACATTGCGAGAAACACAAGCATGACTTAGAAGATGGATGTGTCTTTCCTTGCCCTCTCTGCGATTatgGATATGCGAATCTAAAATGGCTCAAATGTCATTTAAAAGCAGCGCACGATAAACCAAAAGAAGCTGAAGATGCTATCGAAATTAAAGATAAAACTTCGGAAGAAAAGACATCGGGAGATGCAAATAATTCAGAAATAACGGAAACGAAAGAACCTGAAATTGAGATCAAAACGGAGGTGAAACAAGAGGTGGATAGTAGCGATGATGAAATATGGATTCTACAAACTGGAGATGAAGATGCGACGGGCCGCTTACAGAAATTGTTGCAGAGTGTTAAGAAAGAACCTGAAATTGAGATCAAAACGGAGGTGAAACAAGAGGTGGATAGTAGCGATGATGAAATATGGATCCTGCAAACTGGAGATGAAGATGCGACGGGCCGCTTACAGAAATTGCTGCAGAGTGTTAAGaTCAAAAATGAAGAGGAGCCTGAAGTAACGAAGCACAATTGCGCTAACTGCAGTCAATCGTTCACATCAACAGCTGGTTTGCTTAACCATAAGTGTGTTCGGAGGCGAGGAAGGAAACGTAAGCCGAAGGATGGGCTAGTTTGTGTACCAACTAAGGAAGATTTCTACAAGCGAGCCCAAGGAAGGATGAAGCTAGTATCAGTTGACAACGATTTACTGGTTGAGAGACCTCGCAAGAAGCGTAATCGCCAACCGACTTCAGATCCTCAAATCGTCACTTGCCATAATTGCAATGAATCTTTCACGTCAAAAGTTCGACTCAAATTTCATATGCAATTCCACGAGACCAATACCTTCTTAACCCCTACCGGAGAATACCAGTGCCCGGAGTGTAATGATGCCCAGTTCCCCACCGAGAGCGAGCTGTTTGACCACGTCCATTTCAAACATGATAAGCAGAAGCGATGGCAATGTCCGGTCAAGGATTGTGGGAAGACTTTCTTCCTCAGAGCGAGCCTGACGGAACACAGCCGCATGCACACAGACACGCGGCGGTACGCGTGCGAGACCTGCGGCAAGCGGTTCCTGGACAAGCAGACCCTGGACCAGCATGGTGTTACGCACTTGCAGGTGGCTTGGTGTGACGTTAGCTGGCCCAGACCCAGAGCGAGCCTGACGGAACACAGCCGCATGCACACAGACACGCGGCGGTACGCGTGCGAGACCTGCGGCAAGCGGTTCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGAGCATGGTGTTACGCACTTGCAGAGACCTGCGGTAAGCGGTTCCTGGACAAGCAGACCCTGGACGAGCAAGGCGTTACGCACTTGCAGGTGGGTTGGTGTGACGTTAGCTGGACCCAGATCCAGAGCGAGCCTGACGGTACACAGCCGCACGCACTCAGACACATAAAGCCGTTTCAATGCCACATATGCCTGAAGCAACTGACTCGTCGCTCTCGTCTCCGGATGCATTTACGAGCTCATGAAGAGGAACTGCGACCTAAGCTGGTTCTGGTATGCGCTGTTTGCAGCCGCGCCTTCAGGGACCAATTAGAAGCTCAGGAGCACGCATCTAAATCGTCTGAATGCATAGCAGCGTTCACAGACGAACTGAAAGACGACACTGAAGCGGTGACAGAGCAACTGTCGCCGACAAGCGGCGTCGTCAGACACACTGTCAGGATTGTTGAATCACCCAAACTAAGCAAGCCGATAGACCGAGAAGTGATCGACACGGAAAGCGAAGCCTTGCTGTCGGCTCTAGAGGACTCGGCGAGGCCTATAATACGCGTGGTCAGGATTGAGAAGGCCTTCAGATGCGAGTATTGTGAGGAcgTGTTCTACCAAGAGGACGCACTAAACACCCACCGAGGCATTCACAAAGGTGTCAAGAATCCCTTCACCTGCCATATTTGCAAAGTCAGCTTCGCCACTTACTCCAGN
- Protein Sequence
- MGKSPEPLILCLENTEGEEVSIAIESNDNFQMFLDKAKSLLGFDIDLNSITNNQPVALTDNIYDFLINTERNANELSNETFDQMLEPSATDDLVYVLDDGTQIKASQIHFDNEDPPVDLTAEEIPFVKYADSSDDDDKNASIETTKKINIVESPVAKWSSQHPSPKCSFINSLPFKLVCNNTSNFEAQFTKYLESSTKNPTPSFNYDKNVTRKDDFNLTREDILNMFKDAPVTSVPYDETSLSDKRKHVRKTDPTRLVHKTWNSKPLSCVVDSHSEMCFICRKFVDRNLEKLYLFDNEDQKLHRCSPQRRYSTQLKILCEQCLAENFKPCSMKSPSQSLKSDEYLIIKNNQQYIFKKVTSINLKDCDNDFILPDDRKGRDTHTFITDKQGMDYVKIEIGSDGEIVTKSLYDDPRSDDVIIVKDENKDSSSDVEIIEPDDSVIENLDDCDEDVKEFLGKYQCDNNDSVELKCRFCDQIFENIPEVIEHCEKHKHDLEDGCVFPCPLCDYGYANLKWLKCHLKAAHDKPKEAEDAIEIKDKTSEEKTSGDANNSEITETKEPEIEIKTEVKQEVDSSDDEIWILQTGDEDATGRLQKLLQSVKKEPEIEIKTEVKQEVDSSDDEIWILQTGDEDATGRLQKLLQSVKIKNEEEPEVTKHNCANCSQSFTSTAGLLNHKCVRRRGRKRKPKDGLVCVPTKEDFYKRAQGRMKLVSVDNDLLVERPRKKRNRQPTSDPQIVTCHNCNESFTSKVRLKFHMQFHETNTFLTPTGEYQCPECNDAQFPTESELFDHVHFKHDKQKRWQCPVKDCGKTFFLRASLTEHSRMHTDTRRYACETCGKRFLDKQTLDQHGVTHLQVAWCDVSWPRPRASLTEHSRMHTDTRRYACETCGKRFLXXXXXXXXXXRAWCYALAETCGKRFLDKQTLDEQGVTHLQVGWCDVSWTQIQSEPDGTQPHALRHIKPFQCHICLKQLTRRSRLRMHLRAHEEELRPKLVLVCAVCSRAFRDQLEAQEHASKSSECIAAFTDELKDDTEAVTEQLSPTSGVVRHTVRIVESPKLSKPIDREVIDTESEALLSALEDSARPIIRVVRIEKAFRCEYCEDVFYQEDALNTHRGIHKGVKNPFTCHICKVSFATYSX
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -