Clyc008385.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01000537.1:525088-535448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.9e-05 0.0039 18.2 1.6 1 23 360 382 360 382 0.99 2 11 6.7e-05 0.0054 17.8 4.8 1 23 389 412 389 412 0.96 3 11 0.011 0.86 10.8 2.9 1 23 416 438 416 438 0.95 4 11 1.2e-05 0.00099 20.1 0.4 1 23 443 466 443 466 0.97 5 11 0.0083 0.67 11.2 0.7 2 23 471 493 470 493 0.94 6 11 0.043 3.4 8.9 0.1 2 20 504 522 504 524 0.95 7 11 0.48 38 5.6 4.1 3 23 525 548 525 548 0.90 8 11 0.00059 0.047 14.8 6.1 2 23 566 587 565 587 0.96 9 11 5.8e-05 0.0046 18.0 0.1 1 20 593 612 593 615 0.93 10 11 1.4e-05 0.0011 19.9 2.1 1 23 621 643 621 643 0.98 11 11 0.65 52 5.2 4.1 1 23 649 672 649 672 0.92
Sequence Information
- Coding Sequence
- ATGGGAGAGATAACTTATTGCTCCGTGTGTCTGGTGACAGCCGTAAGGATGTTTGAAATGAGCCCCACAGCGTATAAGATTTACCATGAGTTGGTAGCAATACATTTAACATTGGACAATTTGATAAGCATTGATCGTGAACAAAATGATTTGGGATCAAAACTAACTCTGTCGGCATATGTAATAGCTGATTCCTACCATCcggacaaaaaaaataaatgtcatgcctcagataatatttttaatgttggaAAAGTAAAATCCGAATCCTTTGTAGATAGTTTAAAAGGGCAATTTATTGAAGATAATAATGGTGTAAGGATAGAATTGCAACCAACTAATAGTGAATCTAGTGTTGAAGACACATTAAATAATGATGGTCATCAAGAATCTGGTGACAGTATGAAAATAGAATTTCTTGATGATGGAACACAAcaacatgaaattttaaatcactttCAAAATGTTGATATGTTAGAAGTTAATTGTCCCGACTACAATCCAAAGAAAGATAATGCTTCGAAAATCCGTGATGACATAAAGATAGAATTAGAAGTAGAAAGTATACAAGAACATGATATTCCAAATGATGTGTTATCTGAAGATAAGTTGGACTGTGCAAGTGACAGTGATGAGTCAAATGCGTTATCTGATGACAAGTTAGACTTTGATAGTGATAGtgatgaattaaatgaaatattagcCAGATATCCAATTCCAAATTGTACTAATGTAGGTAAATCAAAGGCCAAAAAGCGAAAAATAGAAAGTCAAGACAAAAgcacattacaaaataaagtaacaaCAAAACGAAAGAGTGAAatcaaaaaagaaagtttagaaaatattaaagttatatcagttagtgatataaataaaaaacagctcACGAAAAAAGTGtctcaaagaaataaaacaaaaagtgtaATGGTATTAAATAGAGATAAGAGAGATAGACGCTACTCTTTCGATCCAactatatttaaagattatgcAACTATTATCCTATTGACCCCAGAAGATGCAAGGCGAGATGTGCTTCTAAGAAAGGAATCAGCTAATTACAAGCAGTGTACATACAAATGTGAATTATGCTACCGAGGATTTATTACTCAAGCTACATATCAAACACATATGAATAAACATAGTttgGAATATGGATCCCATGAATGTGAAATCTGTCAATTGAGATTTAGTGATAAGAAGAATCTTCGTAAGCATCGCCTGGTTTGCCACACACGGAAGTTTCTTTGCAAGATCTGTCCTTACATTTGTTACAGTCCggACCAAGCTAAGAATCATATGTGTTCACACAAAGGCAAGAAATATCCATGTAAGGAATGTGGGGAGGTGTTCAAgTTTCCAAACAGCCTCTTAACTCACACACGTTTAAAACATTCCGTCGAGCTCGTGTGCGATCTCTGCGGCAGTACCTTCGGATCGAAGAAGGGATTGGAAGTTCATAAACACAAACTTCATAAGaggGAAACAAACGACCGGCAAGGTCCTCGTTGCGAGGAGTGCGACGTCCACTTCGCTACAGAAATGGCGTGGAAGAGACATCTGGTGCTCTGCTCCAAACATGGAtgtGACCTACAACTAACAAACAACAAAGAATACAAACATCACATGACAACAGAACATCCACAAACGGACATCGCCCAAGCAATAATGAAAATACAGCAAAAGAAGTGTGTATGCGAGATATGCGGGATGATGTTCAAACATCCATGTTTCCTTCAACTTCACCAACGGAAACACACGGGCGAAAAACCATACAGTTGTCCGGAATGTGGCAAGAAATTCACCAGTTTGAACGCGGTGAAAGCTCACCAGCCTgtacatactaatatatacCCGTACAAGTGTCACATCTGCGATAGGGCGTTCGGTGATAAGGGAAGACTTAATAAACATGTTAAGTATCACTTGGGCATACGACCACACAAGTGCTGGGGTTGCGACAGATCATTCCTGTTCAAGTGTGAGATGAAAAACCACGCGCAGTATGTCCACGGTAAGGTGCCCTGGCCGAAGCGAGATCGTGCCAAACGCAGCACTGATGTAAAAGAATAA
- Protein Sequence
- MGEITYCSVCLVTAVRMFEMSPTAYKIYHELVAIHLTLDNLISIDREQNDLGSKLTLSAYVIADSYHPDKKNKCHASDNIFNVGKVKSESFVDSLKGQFIEDNNGVRIELQPTNSESSVEDTLNNDGHQESGDSMKIEFLDDGTQQHEILNHFQNVDMLEVNCPDYNPKKDNASKIRDDIKIELEVESIQEHDIPNDVLSEDKLDCASDSDESNALSDDKLDFDSDSDELNEILARYPIPNCTNVGKSKAKKRKIESQDKSTLQNKVTTKRKSEIKKESLENIKVISVSDINKKQLTKKVSQRNKTKSVMVLNRDKRDRRYSFDPTIFKDYATIILLTPEDARRDVLLRKESANYKQCTYKCELCYRGFITQATYQTHMNKHSLEYGSHECEICQLRFSDKKNLRKHRLVCHTRKFLCKICPYICYSPDQAKNHMCSHKGKKYPCKECGEVFKFPNSLLTHTRLKHSVELVCDLCGSTFGSKKGLEVHKHKLHKRETNDRQGPRCEECDVHFATEMAWKRHLVLCSKHGCDLQLTNNKEYKHHMTTEHPQTDIAQAIMKIQQKKCVCEICGMMFKHPCFLQLHQRKHTGEKPYSCPECGKKFTSLNAVKAHQPVHTNIYPYKCHICDRAFGDKGRLNKHVKYHLGIRPHKCWGCDRSFLFKCEMKNHAQYVHGKVPWPKRDRAKRSTDVKE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -