Clyc008382.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cecropterus lyciades
Gene Symbol
Sall1
Assembly
GCA_002930495.1
Location
MOOZ01000537.1:495088-509441[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00065 0.052 14.6 1.5 1 23 368 390 368 390 0.99
2 13 0.038 3.1 9.1 5.6 1 23 397 420 397 420 0.96
3 13 7.9e-05 0.0063 17.5 0.3 1 23 451 474 451 474 0.97
4 13 0.011 0.86 10.8 0.2 2 23 479 501 478 501 0.93
5 13 0.052 4.2 8.7 0.1 2 20 512 530 512 532 0.95
6 13 0.0026 0.21 12.7 0.0 3 23 542 562 542 562 0.99
7 13 0.052 4.2 8.7 0.1 2 20 593 611 593 613 0.95
8 13 0.0026 0.21 12.7 0.0 3 23 623 643 623 643 0.99
9 13 0.032 2.5 9.3 3.0 2 23 662 684 661 684 0.96
10 13 3.1e-05 0.0025 18.8 3.5 2 23 702 723 701 723 0.96
11 13 5.3e-05 0.0043 18.1 0.9 1 20 729 748 729 751 0.93
12 13 9.5e-06 0.00076 20.4 3.6 1 23 757 779 757 779 0.98
13 13 0.93 74 4.7 3.8 1 23 785 808 785 808 0.91

Sequence Information

Coding Sequence
ATGGGAGACGTAACGTATTGCTCCGTTTGTCTGGTGACAGACGTGAGGATGTTTGAAATGAGCTCCACAGCACTTAAGATTTACAATGAGTTGGTAGCAATACAAGAGGTAACGtgggaaaatttaaaaaacattaatcgtAAACAATACAAGTTGGAATCAAAACTAACTAGGACATGCACCACAACTAAATACTACCTACCTGTCAAAAAAAATGAGTGCCATGTTCTGGGTAAGAAAGgtattaaagtaaaaacagAATCCTTTATAGATAGTTCAGATGAACAAGATATTGAAGATGATGTATATGTAAGAGGAGAAATACAAGCACATAATAATGAATCGGCTAATATTGATGATCACTTAATCAATGTTGATCAAGAATTTGGTAGTGAAGAAATGAAAACAGAATTCTATGATGAAACACAACAACCCAGAATTGAAAATCATTTTCAGAGAGTTAATATGATAGAAGTAAACTGTCCTGACTATGATCCAAACAAAGATGCTGCAAGAATAAATGTTGGAAATGTGAAAATAGAATTAGAAATAGAAAGACAAGAAAATGATATTACAAATGATGCACTTTCTGATGACAAGTTGGACTTTGGGAGTGATAGTGATGAATTAAACACACTTCCAAATGATAACTTAAACTTTGGTAGTGATAGTGATGAATCTAAGGCACTCTCTGATGATAAATTGGACTTTGATAGTGAAAGTGATAATGAGGAATTGAAGGAAATATTATCTAGATACCCTGTACAAGATggaaaaaatgtatcaaattcaGAAACGAAAAAGAGAAAGATCATACAGGATAAAACAAACTCAGTTAAAAGGAAAGTTACAAAGAAACGGAAAACAGAAATTAGtgtagaaaagaaagaaaaaagtgaaaaaaataaaaagcaggtCACAAAGAAAGTGCCTCGAaagagtaaaagtaaaagtGCAGTACAAAAAGATAAGAAAGATAACCGTTACTCATTCGATCCATCTATTTATAAAGACTATGCAACTATTGTTATGCTGACCCCAGATGAAGCAAAGCATGAGTTTCTTCTAAGAAAGGAATCAGCTAATTACAAACAGTGCGAATATAAATGTGAATTATGTTACCGAGGATATAATACAGAGGCTACATATCAAACTCATATGAATAAACACACTTtgGAATATGGCTCGCACGAATGCGATATCTGTCGATTGAGATTTGGTGAAAAGAAACACCTACATCGACATCGCCTAGTGACTCACACACGGAAGTTCCTCTGCAAGATTTGTCCATATATCTGTTATTGCCCAAGCCAAGCTAAAAATCACATGTGTTTACACAAAGGCAAGAAATATCCATGTAAAGAATGTGATGAGGTATTTAAaTTACCAAACAGTCTCTTAACGCACACACGTTTAAAACATTCCGTGGAGCTTGTGTGTGATCTGTGCGGCAGTACGTTTGGATCGAAGAAGGGATTGGAAGttcataaatacaaattacatagaAAGgAAGTGAACGACCGGCAAGGTCCTCGTTGCGAGGAGTGCGACGTCCACTTCGCTACGGAAATGGCGTGGAAGAGACATCTGGTGCTCTGCTCCAAACATGGAGTTAGcgaTGGTTGCACCATATGCGGCGACATATTCCCTGACGCGGCAAGTCTGAAAGCGCATACGAAAATTCACGGACCACGCCCCAGCTCCACCTGTTACCAGAAAGACAAGATCAAACTACCCACAACATGCAAATATGAAGAGAACGAGCGGCAAGGTCCTCGTTGCGAGGAGTGCGACGTCCACTTCGCTACAGAAATGGCGTGGAAGAGACATCTGGTGCTCTGCTCCAAACATGGAGTTAGTGATGGATGCACCATATGCGGCGACATATTCCCTGACGCGGCAAGTCTGAAAGCGCATACGAAAATTCACGGACCACGCCCCAGCTCCACCTGTTACCAGAAAGACAAGATCAAACTACCCACAACGTGCAAATATTGTGAGGAACAATTAACAAGCACCAGAGAATACAAACATCATATGACTACCGTACATCCGCAATCAGACATCGCCGAGGCGATAATGAAATTGACACAGAAGAAGTGTGTTTGTGAGATTTGCGGGATGACATTTAcaCAACCATGTTTCCTACAAGTGCACCAGCGTAAACACACGGGCGAGAAACCCTTCAGCTGCCCGGACTGTGGCAAGAAGTTCACAACATTGCATGCCGTGAAGTCCCACCAGCCTGTACACACTAATATATACCCGTACAAGTGTCACATCTGCGATAGACCCTTTGGCAATAAATACAGACTCAACAAGCATATTAAgtaTCACTTAGGCATCCGACCACACAAGTGCTGGGGATGCGATAGAACATTCCTGTTCAAGTGTGAGATGAATAACCATGCTCAGTATGTCCACGGTAAGGTGCCCTGGCCGAAACGAGATCGCACTAAACGGGGCTCCGATGTTAAGGAATAA
Protein Sequence
MGDVTYCSVCLVTDVRMFEMSSTALKIYNELVAIQEVTWENLKNINRKQYKLESKLTRTCTTTKYYLPVKKNECHVLGKKGIKVKTESFIDSSDEQDIEDDVYVRGEIQAHNNESANIDDHLINVDQEFGSEEMKTEFYDETQQPRIENHFQRVNMIEVNCPDYDPNKDAARINVGNVKIELEIERQENDITNDALSDDKLDFGSDSDELNTLPNDNLNFGSDSDESKALSDDKLDFDSESDNEELKEILSRYPVQDGKNVSNSETKKRKIIQDKTNSVKRKVTKKRKTEISVEKKEKSEKNKKQVTKKVPRKSKSKSAVQKDKKDNRYSFDPSIYKDYATIVMLTPDEAKHEFLLRKESANYKQCEYKCELCYRGYNTEATYQTHMNKHTLEYGSHECDICRLRFGEKKHLHRHRLVTHTRKFLCKICPYICYCPSQAKNHMCLHKGKKYPCKECDEVFKLPNSLLTHTRLKHSVELVCDLCGSTFGSKKGLEVHKYKLHRKEVNDRQGPRCEECDVHFATEMAWKRHLVLCSKHGVSDGCTICGDIFPDAASLKAHTKIHGPRPSSTCYQKDKIKLPTTCKYEENERQGPRCEECDVHFATEMAWKRHLVLCSKHGVSDGCTICGDIFPDAASLKAHTKIHGPRPSSTCYQKDKIKLPTTCKYCEEQLTSTREYKHHMTTVHPQSDIAEAIMKLTQKKCVCEICGMTFTQPCFLQVHQRKHTGEKPFSCPDCGKKFTTLHAVKSHQPVHTNIYPYKCHICDRPFGNKYRLNKHIKYHLGIRPHKCWGCDRTFLFKCEMNNHAQYVHGKVPWPKRDRTKRGSDVKE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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