Clyc013659.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01001136.1:31650-37797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.014 1.1 10.5 0.8 2 23 36 57 35 57 0.96 2 14 0.00021 0.016 16.2 1.0 1 23 94 117 94 117 0.97 3 14 0.00047 0.038 15.1 0.4 1 23 119 141 119 141 0.98 4 14 0.00031 0.024 15.7 0.1 1 23 176 198 176 198 0.97 5 14 7.3 5.9e+02 1.9 0.1 3 19 230 246 228 248 0.92 6 14 0.39 31 5.9 3.6 1 19 258 276 258 280 0.89 7 14 2.1e-06 0.00017 22.5 0.1 1 20 286 305 286 306 0.97 8 14 0.012 0.92 10.7 0.4 1 23 319 342 319 342 0.95 9 14 0.0011 0.09 13.9 0.1 2 23 348 371 347 371 0.95 10 14 0.27 22 6.4 4.7 1 23 377 399 377 399 0.96 11 14 0.0019 0.15 13.2 1.3 1 23 404 426 404 426 0.96 12 14 0.0023 0.19 12.9 1.0 3 23 434 454 432 454 0.96 13 14 9.6e-06 0.00077 20.4 5.2 1 23 460 482 460 482 0.97 14 14 2.2e-06 0.00017 22.5 0.9 1 23 488 511 488 511 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCACTCATCAGTTTACCCCCAAATAATATGCCGAGCTCGAAGGAGTCCATGTTGATATATATACCCAAGCAGACAACAATTGATCTAGTTGGTGGCATACGGTGCAACATATGTCTAATGACATTTGCAACGAAGAAAGATTATGATAGCCACTACACTAGCCATCCCAACGTCAAGGAAATCATATACACATGCAACATATGTTACAAGGAGATAGCTGGCTATCCGAGCTTCCGTGGTCATTGTTATACTAATCATGTGATTAAAGACAGATTCAAATGTGAACATTGCTCGAAACAATTTTCAAAACTCGCCGTTCTCAACGAGCATATTAACATTGTGCATAAATTTAAATGCCCTTCGTGCAGCAAAGAATTTGCCAATAGAAAAGAAATGCTGTTGCATCAGATAATCCACAGCGATTCTGACAAGCCCCCATACAAATGCAAAACTTGCAAAACAGACATAGACACGGTCGACGAGTGCAAGGAGCACGTCGAACTACATTTGCAATTCCTCTACGCCTGCCCCATTTGCAACGAGAGCATCACCGATAAATCCAACGCCGTTGATCACATGAAGCAGCATTTCGGTGACGTGATCACTGATGATGAGGTTATTGGAACTGAGATCACGAAGACATCAGAGGAGACCTTCATTGAACATCTCGGTGGGATCTTCTGTGAGTTGTGCTCTACAGTGCTGAAGAATAGAGTGGAGTTCGACGCTCACTTCTCCTGCGAGCACGGGGACGAAGACATTGTGTACATGTGCGTCGTTTGCGGGAAGACGTTTGAAAAGTATTCAGTATTTTACAACCACTGCTACAATCACTCTGTGAGGAATAGATACGAATGCAAGATATGCCAGAAGTCGTTCACGCGGGCGTCGCTGCTCGCCACGCACATGGTGGCGTGCCAGCAGGCGGGCGCGACTAACGGCAAGCCGTTCGCTTGCACGGTGTGCGACCACCGCTTCGGCTACGCGGCCCGCTGGCGGGAGCACATGCGGGACGTGCACGGCTTCACGCGGCTGCCGTGCCCGCATCGCGGCTGTGACCTCGCTTTTGACACCCCAAAGGAGCTCATCCTTCACCAGCAGTCGCACGATGTAACGATCCGGCACTACTGCAACCAGTGCAAGCTTGTCTTCACGACCTTGGCCGCTTGCGAGCATCATATGGAGTTGCACAGGAAGAAGATCTTCTACTGTCCCGTCTGCAAACGTAATTATAGGGACAAGTACCTCATAATGAAACATGTGTCGCAACATTTCGAAACCGTTCTGCATCTCTGCAAGGTGTGCGGGAAACTCTACACCGCTAAAGGCCGTCTCGCTGAGCACATGAAGACTCATTCGAACGTTAAAAACCATTCTTGCAAGTACTGCAATAAGACATTCTCGAAACAATACAAGTTAGAAGAGCATTTAAACACGCACACCGGTTCCAAGCCTTACAAATGTCCCGTCTGTGTAAAGACGTTCGCAAGCTATTCCAATTGGCGGAAACATGTTCGTAGGATGCACGCCGAAGATCAAGTGAACCTTAAAAATCCTTTAACTGATCGCACGGAGAGTCTTGATGATGACGGCTCTGCAATGGAAACAGTCGTGGACGAAGAAGACGATATATCAACAGATATAACAGATGATACTCTTTTGAACACCGATGAACAAATATCAATAGACAGTCAAAATTGTAACACAAACCCGGTTGCGAACATAGTGAATCATACAGAGAACACAGATTGTCTGGTTGATATCGTCCATGCCAACGCTAGCATAGATTTCGCGAACGTCAAGTTGGAAACTTACATATTCAATGAAGCAAACGATGGTAATATTGAAGTTGATAACATCCTATCGATTCCGGTTGGAAAAGATTTGTTCAATGAAAATAACGGAGGAAACGCTCCaatggaaaatttatttaatggaaatacagaaaataatcAGATTGAAACTCACTTGTTTAATGGAAATAGTGACGAAAATAATTCGATTACAACTCATTTGTTCAATGGAAACAGTGGGGAAACGGCTCCGATTTGTGGTGACATTTGTAATGGGAACAATGCCGAGAATACTCCGATTAGTGGAGATTTGTTCAATGAGGGAAATGCTGCGATTGGTACGAATTTGTTCAATGCGAATAGCCAGGAAAATGTGTCGGTTGCAAAGGGCTTGTATCATGGAAATGGCGAGGAACCCGTTAATCCCGTTGACATACTTGAATACATCGCCGAGATGCCAGAGAATAATTCATTGTTTGTTCCtgTTATACCCCAAGAACCGTTAGCGCCGACTACAGTGGAGAGCCCGGCCGCGACGGCGACGTACCCCTGCGAGTAcggtcccgagttcgattccgGCTTCGACGCCTGCGCGCCCGGCTTCCTCGACCTGGACGACCACATGCTGCCCCACATCGACCCGCTCCTCACCATCAAGGACGAGACCTGCAACAAAATGTACGTACAGATGCAAAACAATCGAAGCGATTACAACGTCACCGTCGAATCGACCGAATACGAAACGTCCCCGAAGTGGGAACCGCCGATCATAACAAAGCTCTACGACGCCTTCAGCTACGGCGAGGCGGACGCCAACAGGCTATCTATAATGAACACTGatatattttga
- Protein Sequence
- MASLISLPPNNMPSSKESMLIYIPKQTTIDLVGGIRCNICLMTFATKKDYDSHYTSHPNVKEIIYTCNICYKEIAGYPSFRGHCYTNHVIKDRFKCEHCSKQFSKLAVLNEHINIVHKFKCPSCSKEFANRKEMLLHQIIHSDSDKPPYKCKTCKTDIDTVDECKEHVELHLQFLYACPICNESITDKSNAVDHMKQHFGDVITDDEVIGTEITKTSEETFIEHLGGIFCELCSTVLKNRVEFDAHFSCEHGDEDIVYMCVVCGKTFEKYSVFYNHCYNHSVRNRYECKICQKSFTRASLLATHMVACQQAGATNGKPFACTVCDHRFGYAARWREHMRDVHGFTRLPCPHRGCDLAFDTPKELILHQQSHDVTIRHYCNQCKLVFTTLAACEHHMELHRKKIFYCPVCKRNYRDKYLIMKHVSQHFETVLHLCKVCGKLYTAKGRLAEHMKTHSNVKNHSCKYCNKTFSKQYKLEEHLNTHTGSKPYKCPVCVKTFASYSNWRKHVRRMHAEDQVNLKNPLTDRTESLDDDGSAMETVVDEEDDISTDITDDTLLNTDEQISIDSQNCNTNPVANIVNHTENTDCLVDIVHANASIDFANVKLETYIFNEANDGNIEVDNILSIPVGKDLFNENNGGNAPMENLFNGNTENNQIETHLFNGNSDENNSITTHLFNGNSGETAPICGDICNGNNAENTPISGDLFNEGNAAIGTNLFNANSQENVSVAKGLYHGNGEEPVNPVDILEYIAEMPENNSLFVPVIPQEPLAPTTVESPAATATYPCEYGPEFDSGFDACAPGFLDLDDHMLPHIDPLLTIKDETCNKMYVQMQNNRSDYNVTVESTEYETSPKWEPPIITKLYDAFSYGEADANRLSIMNTDIF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360003;
- 90% Identity
- iTF_01360003;
- 80% Identity
- -