Clyc016110.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cecropterus lyciades
Gene Symbol
-
Assembly
GCA_002930495.1
Location
MOOZ01001640.1:494511-508500[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00024 0.019 16.0 3.6 1 23 235 257 235 257 0.98
2 11 0.00031 0.025 15.6 6.5 1 23 263 285 263 285 0.96
3 11 0.0021 0.17 13.0 6.9 1 23 291 313 291 313 0.98
4 11 0.00089 0.071 14.2 1.0 1 23 319 341 319 341 0.97
5 11 9e-06 0.00072 20.5 0.9 1 23 347 369 347 369 0.97
6 11 2.8e-06 0.00022 22.1 0.1 1 23 375 397 375 397 0.98
7 11 7e-05 0.0056 17.7 0.4 1 23 402 424 402 424 0.96
8 11 0.6 48 5.3 3.3 3 19 432 448 431 454 0.92
9 11 2.1e-05 0.0017 19.4 0.8 1 23 561 583 561 583 0.98
10 11 0.0023 0.19 12.9 1.4 1 23 647 669 647 669 0.95
11 11 3.7e-05 0.0029 18.6 4.3 1 23 679 701 679 701 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCGACGCCGAGCAATGTTTCGGGCTTCGGTTACTCGTGGGGTTTCACGAGTAGTGCGGACCTCACGAAGGGCGAAGTGGAAACACCCAGCAGCATGAGCTATACGCTCGGAAATACTGTGTCTCCAGAAACAACACTAACAGTAATGTCTCACAAAACCCCACAAGTCCAGGAGAAGGTGGGTGCTGTGGTGGCTGTATCAAACTCGGCGGCACAAGTGACCAGGGTGGTGACGACTGGAACACCAGTCACAGCGAGGAGAGCGATGTTTGTGTTGAACGAAGCACCCGCACATACAATTAATAGGGTTACCCAACAAAACCAAACTGCCACCATACAAACGACGACGCTTGCGGCGAAGTCCTTTATGACACCGATCGGTCCCATCCAATTGACTGCTGAAGAATGCAATGAGATTCTGATGAAGCGAGCATTACAAGCGCAGGGTATTGCCACGCCGGTGATAGACGCCTCGCAGTTAAACCACACGATATTGAATGGAGGGCTCAAGAGCCTGGCGGAGGCCACGACGCAACAAACACAAGCGGATACGATACAAACGACGACGGTACATCAACACCATTTGTTGCACACAAAACAGGAGCCCGGAACAGCAAATAATTCTCCTAAAGCGGAGTTGCTCGGCGGCGGCGTGATGACGTCAGTGCAGCCCGCCGCGGTCAAGGAGCGCCCGTACACGTGCGACGAGTGCGGGAAATCGTTCCTGTTGAAACACCATCTCACGACGCACGCGAGGGTGCATACAGGCGAAAGACCCCACGTGTGCGCACACTGTGGCAAGGCGTTCGCGAGGAAGCACTGTCTCAACACGCATCTGTTGTTGCACTCCGCCGACAGACCGTATAGATGTCACGAGTGCAAAATGGCGTTCACCCTCAAACACCACCTCGTCACGCATTCCAGGGTGCACAGTAGGGAGCGTCCGTTCGTATGCGGCGAGTGTGGGCGTGGTTTCCCGTTGAAGCGACATCTCGTGACCCACAGCAAGTACCACGCGGGCGAGCGGCCGTACGTGTGCAGCGATTGCGGGGAGAGTTTTGCACAAAAGGAGCACTTGGTGATGCATAGTCGTTTCCACGGCTCGCTATCGCCCTTCCAATGTCCGGACTGCGGCGTGGCGTTCGCCCGCAAGTTCCAGCTGGTGAACCACGGCCGCGTGCACGGTCGAGTGCCGCACGCCTGTCCGGTATGCGGGAAGGAGTTCCTGCAGAAGCGGACGCTCGTGGCTCACATGAAAATCCATACAGGGGAGGGCGTTGTCGCGTGTCTAGAATGCGGAGAGGCGTTTAAATGCAAGTCTGAGCTACAACAGCATTGTAAGATAAACAGGCACTGTCTCTCCGCGAACCAAACTCAACAGCAAACACAACAACAGCAACAGCAACAACAGCAGCAGCAACAgcagcaacaacaacaacaacaacagcagCAGCAACAACAACAAGCACAACAGCAGCAACAACAGGCACAGCAACAAGCTCAACAACAGCAACAAGCGCAACAGCAACAACAGCAGCAGCAACAacagcaacaacaacaacaacagcagcagcagcagcaaACAACTGTGATAAAGCAAGACGACTTTAAGCCCCAAATTGTACAGGTTATTGGTGCTGATGGTCAGATATTAACGGAGAAGGCGCCGGGTTATTCGTGTCCAGAATGTGGTTCCTGTTTTAATACTAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTGACGGCGGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACCACGCGCACCACAatcaACCCATCCAAATAATATCGTCCAATCCCAATAATGTAGTCCATACGCAAGTAATAGCAACGAATCACCACGTAAACCCGCCTCGGCCGAAAGTACACTTTTGTGTCGATTGTGGGAAGGGATTTGCTGCGAAACACGGTTTATTGGCACATCGTAGCAGGCATCCAGAAGGTAGTTGTACGCTGCGAACTCACGTGTGCGATCAGTGTGGGAAGGCCTTCTTTCAGAAGAACCATCTCATGCTGCATCAAAGGCAACATATGGATTTGCCACCTAGAAATCAGAACCAGCAAGCCGCGCAGCAGGCGTCGCAGCAAGCTCAGCAGGCTGCGCAGGCGGCGGCGCAgcaggcggcggcggcggcggcggcggcggccgcgCAGCAGGCGCAGGCGCAGCACCAGCAGGTGCAGCACGCCGCGCTCGAGCTGGACGCCGAGCACGCGCAGCACATACAAGTGGTAACAAACCGGTCGGGGCAGGTGATAGGCAACCAGATAGTGGTGGGCCGGCGCGGCGCGCTGGGTTCGCAGCTGCACATCATCCCCGCGCCGCGCGACGCCAAGCCCACGCACCTCGCTGCCAAGCGGCACCAGCATGCTAACAGTGGTGATTTAAAGGAAGTAGGCGGTCTCGTAGTATCAACGGGCAGAGGTGCGAACATGATCAAATACGAGATCTCCCTACCGCCACCAAACTCTGTGGTCCAAGTCCAACAACTCGATTGA
Protein Sequence
MCMPTPSNVSGFGYSWGFTSSADLTKGEVETPSSMSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVVAVSNSAAQVTRVVTTGTPVTARRAMFVLNEAPAHTINRVTQQNQTATIQTTTLAAKSFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGGLKSLAEATTQQTQADTIQTTTVHQHHLLHTKQEPGTANNSPKAELLGGGVMTSVQPAAVKERPYTCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRERPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPFQCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLECGEAFKCKSELQQHCKINRHCLSANQTQQQTQQQQQQQQQQQQQQQQQQQQQQQQQQAQQQQQQAQQQAQQQQQAQQQQQQQQQQQQQQQQQQQQQTTVIKQDDFKPQIVQVIGADGQILTEKAPGYSCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAHHAHHNQPIQIISSNPNNVVHTQVIATNHHVNPPRPKVHFCVDCGKGFAAKHGLLAHRSRHPEGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNQNQQAAQQASQQAQQAAQAAAQQAAAAAAAAAAQQAQAQHQQVQHAALELDAEHAQHIQVVTNRSGQVIGNQIVVGRRGALGSQLHIIPAPRDAKPTHLAAKRHQHANSGDLKEVGGLVVSTGRGANMIKYEISLPPPNSVVQVQQLD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00642573;
90% Identity
iTF_00970610;
80% Identity
-