Clyc021138.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01009162.1:61153-65423[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.081 6.5 8.1 2.1 1 23 55 78 55 78 0.88 2 26 0.11 8.8 7.6 0.0 3 23 105 126 103 126 0.96 3 26 0.00067 0.053 14.6 1.3 1 23 147 169 147 169 0.98 4 26 0.035 2.8 9.2 1.6 1 23 173 195 173 195 0.92 5 26 0.0082 0.66 11.2 0.3 1 23 199 222 199 222 0.89 6 26 0.14 12 7.3 4.0 2 23 229 251 228 251 0.96 7 26 0.00076 0.061 14.4 0.1 3 23 260 281 258 281 0.94 8 26 0.017 1.3 10.2 6.3 1 23 287 309 287 309 0.97 9 26 3.7e-06 0.00029 21.7 2.7 1 23 315 337 315 337 0.98 10 26 0.002 0.16 13.1 0.1 1 21 343 363 343 364 0.96 11 26 0.018 1.4 10.1 1.4 1 23 408 430 408 430 0.96 12 26 4 3.2e+02 2.7 0.4 2 23 459 481 458 481 0.79 13 26 0.058 4.6 8.5 0.3 2 23 502 524 501 524 0.94 14 26 0.00076 0.061 14.4 2.1 2 23 530 552 529 552 0.95 15 26 0.049 3.9 8.7 2.5 1 23 557 580 557 580 0.95 16 26 0.67 53 5.2 0.2 2 23 583 605 582 605 0.94 17 26 2.4 1.9e+02 3.4 3.4 2 21 612 631 611 632 0.92 18 26 0.012 0.99 10.6 0.5 1 23 691 714 691 714 0.89 19 26 0.12 9.4 7.6 0.1 3 23 743 764 741 764 0.94 20 26 0.16 13 7.1 1.0 3 23 788 810 786 810 0.95 21 26 0.0016 0.13 13.4 0.5 3 20 817 834 815 838 0.90 22 26 0.016 1.3 10.2 0.3 1 23 843 866 843 866 0.97 23 26 0.0011 0.087 13.9 0.1 2 23 872 894 872 894 0.94 24 26 5.1e-05 0.0041 18.1 4.8 1 23 898 921 898 921 0.97 25 26 0.00022 0.017 16.1 0.6 2 23 928 949 927 949 0.96 26 26 0.0036 0.29 12.3 3.0 1 23 955 977 955 977 0.97
Sequence Information
- Coding Sequence
- ATGAGAGCTATCGAGCAAAGTAAGAAACGCGGGATAGCGCCGACGGAGGCACTGAGTATGTCCTCGCTATCCAACACAACACGTAACAGACTGACAAAACGTAATGCCACGACGATTTTGGAATGTTCCACGGTGATACCGTTCAAATGGCACCGGCATAACTATCTTTGTTTCTTCTGCCATAAAGAATTCAAGAGCGTTGAGGATTTGAAAGGGCATACGTATGAAGATCATGAAAGTACCAACGTTAAATCAGCCGTTTCTTACCTTAAAAGGGACGAGAAAGTGAAAATTGATGTATCGTCTATTGCGTGTAAAATTTGTCAAGCCAAAGTTAACGATATTGACGAATTGATAGATCATCTCAAGATTGATCATGGTAAAACGTTCACGCCGTTCAGCGAAGGCGTAATACCGTACAGACTAGAGAGAGATAGGTATCAATGCGCCGTATGTGGCAAggaatttcattatttcatcaAATTGAATGAACATATGAACGAGCATTACGGAAATTACGTTTGCGAACTGTGCGGCAAATCTTTTCTCAGTCAGGATAGATTACGCTGTCATATGGTCAATCACGGCTCCGGGTATAAATGCAACGTGTGTCCTAAGATTTTTGATTCCCTTACGCAAAAGAATAGCCATGAAGCGCAAATCCATAATAAGGACAAGGGAATCAAGTGCGTGTTTTGTACAGAAACATTCAAGAATTACACGCTTCGTAAGCGACATCACAGCACCGTCCACAACGTTCAATCACCCGCGATAAACTGTCCCGTTTGTGGCAAATCCTTCGAGATTCTCAGTAAGATGCGTTCGCATTTAAAAGAAGTGCACGTTAGAGAGAAGAATCACTCGTGTTCGATGTGTGAACAAAAGTTCTTCTCCAAAACGCACGTGCAACGGCACATGGTGAAGCATTATGGTGAAAGGACGCATCAGTGCGACGTTTGCAAGAAGTCGTACGCGAGGAAACAGACGCTGAGGGAACATATGAGGATACACAACAATGATAGGAAGCACGTTTGTCCCGTTTGCGCCCAAGCTTTTGTTCAGAACAACAGTCTTCGTATGCATCTAAGGTTCAAAAATTTCTTTTCAGATGATAAACCGCGGAAATACAAGGGCTGCGAATCGTCCTCGATGCGTAGGCGAAAAAATCTCGAAATTCTTTTCAACAACACGACGGTCATACCGTTTAAATGGCGCGGGAAGTATCTTTGTTTCTATTGTAGCAAGGATGTTACGGAATACGAGGAACTACGGAAACACACGAAATCTCACGGAAATTGTTCGACGAATGACCACTCTTTGAAAGTTCTCAAGGGCGGTCAGAACATGGAAATCAAAATAGACATTTCTGAAATATCCTGTGATATATGCAATGAACCGTTTCCGTGTTTCGATGAAGTTTTAAATCATCTATACGTGAAACATAAGTTGGAATACGATAAAGAAGTGGATATGGCGATAGAAGAATATAAATTGGTTGATTTGAGCTGTTTAGTCTGCGAGGAGAAGTTTACGTACTTCGGTTATCTAGTGTCGCACGTGAATAATTATCACCCAAAGAATTGTTTAATATGCGATAAATGTAATCAGAAATTCAATAAGAAGAGAGACCTGTTTTCACacataaaaaattatcataGGGAAGGAGGATACAGTTGCGAGTTTTGCACGCAAAGCTTTAGTTCACTCAATATTTTAaggaaacacaaaaataatagacattttacTAGATGCAGCATTTGTCAGCTGAAGCTACCATCTGCTGTGCTTAAACAGAAACATATGGAGTTGGAACACCCAGACGATGGGTCTCTGCAATGCGATATATGCTGCAAGGAATTTCACACAAAGCAAGGTCTGAAGATGCATTCGAAGAAGTGCAAAGGGGACGACGGTCTCTTCGTTCAAATCAAGAAGGAAAGTTTGGATGCAATGGATTTAGATGGTGACTACGAGGATTCGAAACGACCTAGCGTTAAGCAGCTCAGAGAAAACATAGTTATTGTTATAAACATGTCCACGGCAATACCGTTCAATTTCTACAAGAACAAGTTCAATTGCTTTTACTGTTCCAAAGACTTTCCAGATTCGGATTTAATGAGAGAGCATACTGTGTTGGAACATCCAGTATGCGATGTGAAAGAGAAATGCATCAGGAAGTGTAGGGAATCGGTAGCGTGTGTAAAAATCGATATATCGTCCCTCGCTTGTAAGATTTGCTTCGAATCGATGAGTGATCTCGACAGTCTGTTAAATCATCTCATCATTAAACACAACGCGAACTATGATAAGTCGATAACGACGTGTTTGCAACCGTACAGGTTGATAAAGGACCACATGGCTTGCCCGCATTGTCCGAACGAGATATTCCGCTTCTTTGGGACATTGTTAAAACACATGAACAATAAACACaccgataataatataatttgcgtGTACTGTGGTCAGACTTTTAGACGGGATCAAAATCTACGAGTCCACGTCTGGCGTCATCATAGAGATGGGAGGTTTAAGTGTAGTATATGTGGAGCGGAGTGCAACATTCCGTCAAGGCTGTACATGCACATGGCAAAAGCCCATGGGGTCAAAGCAGCAAAGTGTCCGAAGTGTCCCGAAGCGTTTGCGACGCAGTATTTGAGGCAAAAGCACTTGATCGAAGCGCACGACTCTGGTCACAAGTGCTCATACTGTGGAAAGTTGTTTACGAGGAATTCGTTCATGAAAGACCACATACGAAGGACgcatttgaaagaaaaaaacgtGGAGTGTTCGATTTGTAACATGAAGTTCTTTAACAATATTCTTCTAAGACGCCATATGGTGAAACACAGCGGGGAAAAGAACTTCCATTGTGACGTATGCGGGGAAAGATTCTACTGGCGGAAAAGTCTTCGAACCCATATGTCTAGGCACAGTAAACTTATTAATCCCGtacaaatttaa
- Protein Sequence
- MRAIEQSKKRGIAPTEALSMSSLSNTTRNRLTKRNATTILECSTVIPFKWHRHNYLCFFCHKEFKSVEDLKGHTYEDHESTNVKSAVSYLKRDEKVKIDVSSIACKICQAKVNDIDELIDHLKIDHGKTFTPFSEGVIPYRLERDRYQCAVCGKEFHYFIKLNEHMNEHYGNYVCELCGKSFLSQDRLRCHMVNHGSGYKCNVCPKIFDSLTQKNSHEAQIHNKDKGIKCVFCTETFKNYTLRKRHHSTVHNVQSPAINCPVCGKSFEILSKMRSHLKEVHVREKNHSCSMCEQKFFSKTHVQRHMVKHYGERTHQCDVCKKSYARKQTLREHMRIHNNDRKHVCPVCAQAFVQNNSLRMHLRFKNFFSDDKPRKYKGCESSSMRRRKNLEILFNNTTVIPFKWRGKYLCFYCSKDVTEYEELRKHTKSHGNCSTNDHSLKVLKGGQNMEIKIDISEISCDICNEPFPCFDEVLNHLYVKHKLEYDKEVDMAIEEYKLVDLSCLVCEEKFTYFGYLVSHVNNYHPKNCLICDKCNQKFNKKRDLFSHIKNYHREGGYSCEFCTQSFSSLNILRKHKNNRHFTRCSICQLKLPSAVLKQKHMELEHPDDGSLQCDICCKEFHTKQGLKMHSKKCKGDDGLFVQIKKESLDAMDLDGDYEDSKRPSVKQLRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVLEHPVCDVKEKCIRKCRESVACVKIDISSLACKICFESMSDLDSLLNHLIIKHNANYDKSITTCLQPYRLIKDHMACPHCPNEIFRFFGTLLKHMNNKHTDNNIICVYCGQTFRRDQNLRVHVWRHHRDGRFKCSICGAECNIPSRLYMHMAKAHGVKAAKCPKCPEAFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMKDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFYWRKSLRTHMSRHSKLINPVQI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00025404;
- 90% Identity
- -
- 80% Identity
- -