Clyc016337.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01001723.1:110646-114876[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00011 0.0089 17.1 0.4 1 23 68 91 68 91 0.97 2 19 1.1 90 4.5 0.1 2 23 117 139 116 139 0.90 3 19 0.14 11 7.3 4.3 3 23 164 184 162 184 0.96 4 19 0.014 1.1 10.4 0.4 1 23 188 210 188 210 0.96 5 19 0.00071 0.057 14.5 0.3 1 23 216 239 216 239 0.97 6 19 0.0015 0.12 13.5 1.3 2 23 247 269 246 269 0.95 7 19 1.2e-06 9.8e-05 23.2 1.3 2 23 275 297 274 297 0.97 8 19 0.28 23 6.3 0.9 1 23 303 326 303 326 0.92 9 19 2.7e-05 0.0022 19.0 1.7 1 23 332 355 332 355 0.98 10 19 0.028 2.2 9.5 0.1 1 23 454 477 454 477 0.94 11 19 1.3 1e+02 4.3 0.0 2 23 504 526 503 526 0.91 12 19 0.41 33 5.8 1.2 2 23 549 570 548 570 0.96 13 19 6.1e-05 0.0049 17.9 0.5 1 23 574 597 574 597 0.96 14 19 0.00028 0.022 15.8 2.4 1 23 602 625 602 625 0.95 15 19 0.53 42 5.5 0.5 2 23 633 655 632 655 0.94 16 19 7e-05 0.0056 17.7 1.6 2 23 663 685 662 685 0.94 17 19 0.0075 0.6 11.3 1.4 1 23 691 713 691 713 0.98 18 19 2.6e-08 2.1e-06 28.5 0.8 1 23 719 741 719 741 0.99 19 19 5.4e-07 4.3e-05 24.4 3.1 1 23 750 773 750 773 0.98
Sequence Information
- Coding Sequence
- ATGACAATTTTGGAAGgcCGTACGAGAGCATCAAAAAAACGAAAGAGGACATTAAAGGCGGCAAACGAGGACAATGAGCCGATATCTAAGTTAGTTATTCGCGAAAAGCATCTGTCCGAGATGCAGAAGCAATGGCACAATCTAACAACGTTGCTCAAGTACTCGAACGCGACGCCGTTCAAAGATAGGAACGATGCGGGGTACATTTGTGCGTACTGCTATAAGACATATCCTGATCCTGACACGCTGAGGGATCATACGAAACGGGATCACGGCAAAGAGAAACCCTCTTTCAAAGCGGGTTCAGGAATGAGCAGCTTCGTAGCGTTCTTAGATATTGTAGATTTAAAGTGCACGTTATGTGATCAGCCTATGGATAGCTTAAGGACTCTAACAGAGCATCTAGTGAACGTACACGAGAAGAATTATTACCTAGAAGCGACGGATTACTTCCAGCCGTTTAAGCTGACGAACGAGCAGCAGATGAACTGCTGTCTCTGCAATGAAATATTCCACAACATGAAGCTACTGATGCAACATATGAATAACCATTTCAGGAATTTCATTTGCACGATATGCGGTGCCGGTTTCGTGAACAGCTTTCGTCGTAACCGACACGAGACTACACACGTCAAGAAGTCTAGCTTCCCTTGCAAGTATTGTGGGCAGACTTTCGCTGCGGAGTCGAAAAAGAAAGCTCATGTTAATACCGAGCATAAGGGTATCGCAGGCGACAGCGTGTGTCAGATCTGTAAAGCTAGGTTTAAGAATTACTACCAAAAGACGAGGCACATGATGCAAGTCCACAACGTTGAAGGGATCAAATGCGATAAGTGCGAtaagaaattcaatttgaaGTCGAATCTAATGCTTCACATGCGAAGCGTACATTTGAAGGAGAGACCATACGAATGCTCAGTGTGCAATATGGGATTCTTCATCAAGAGACACATGATAGGCCACTATATGGCGACGCACACAAACGAGAGGAAGTTTAAATGTGAAGTATGCGGGAAGGGTTACGCTACACAGAATAGTAAACGAAAACATATGAAGAAGAATCACGGTAGCGGAGATGACAGTACTGTCCTGACGGACATTCAGTCCACGTTGAAACCGAAAGTCAAACATGAGATACAAATCGGCACTAAAAATTTAAAGGCAGCCGCTGAttggaaaataacaataactaaGAAGGAAACTAAAGAATCAACTGATATCCCAAATAATAAACCCAATTCGATAAGACTAGCATTTAAGAAAAGAGAAAGGAAAGAGTTAGACAAACATTTGCATAACATTAGAACTATTCTATTGCACTCAAATGCAACACCGATTAAAAACCATAACGGGATGGGGTATGTGTGTGGATTTTGTCCATTGTACTACGAGAAACCGGCTGATCTCAAGAACCATACATTAGAAACTCATAATGATACAGAAAAGAATATATTCATGAAAGATTCATATTTAGGAGGGTATATAGTTAGGCTTGATATTACTAACCTACGGTGTATGATTTGTGGCAAAGATATCGACGGCTTGGAACAAATGGTTGATCATTTACAAGTAGATCATGATAGGAAAATGTTTACTGATGTCAAAAATCGCATAGTTCCCTTTGGATTCAACAAGGAGGCGTTATACTGTTGTATTTGCGCGAATAAGTTCGACAGTTTCAACGTGTTGCGTATACACATGAATATACACTACAGGAACTTTGAGTGCGAGGAATGTTCGACTCCGTTTATAACTCAAAGGACACTCCGTAACCATCAATCGATAAGTCACAAGAAAGGCGAGTTCAAATGCTCCCACTGTGACAAAATTTATGATACACGATCCAAAATGTTGAAACACGTAAAGGCAATTCATATAGACGGCAAGAATAGGATCAAATGTCCATACTGTGAAGAGAAGCTGATCAACTACAGAAGAAAACGTGAACACATGGAAAAGGTTCACGGTGTAGAGCCTAAAGATATTCGTTGTATGGCGTGTGATAAAACCTTTACAAGTAAATCTAAGTTAACTACCCATACAAATCGGATTCATTTAATGCAGCGGAAATATAAATGTGATTCATGCGAAATGAGATTCTTTAAGCGAGCGGATTTGGCGAGTCATAAGCTAAAACATACAGGCGAAAGGGCATATAAATGTGATATATGTGGAAAGACGTACGTCAGGAAGCCAACGTTGCGGGAACATATGAGGACACATGAGACTGGAAGTGCTAAGTGTAGGTTTAAGTGTGAACATTGCGGAAAGGCGTTTGTGTATAAAAAATCGTGGAGGAAACATATGCGGTCCATACATTCGGAAATCGTTTGA
- Protein Sequence
- MTILEGRTRASKKRKRTLKAANEDNEPISKLVIREKHLSEMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCYKTYPDPDTLRDHTKRDHGKEKPSFKAGSGMSSFVAFLDIVDLKCTLCDQPMDSLRTLTEHLVNVHEKNYYLEATDYFQPFKLTNEQQMNCCLCNEIFHNMKLLMQHMNNHFRNFICTICGAGFVNSFRRNRHETTHVKKSSFPCKYCGQTFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDKCDKKFNLKSNLMLHMRSVHLKERPYECSVCNMGFFIKRHMIGHYMATHTNERKFKCEVCGKGYATQNSKRKHMKKNHGSGDDSTVLTDIQSTLKPKVKHEIQIGTKNLKAAADWKITITKKETKESTDIPNNKPNSIRLAFKKRERKELDKHLHNIRTILLHSNATPIKNHNGMGYVCGFCPLYYEKPADLKNHTLETHNDTEKNIFMKDSYLGGYIVRLDITNLRCMICGKDIDGLEQMVDHLQVDHDRKMFTDVKNRIVPFGFNKEALYCCICANKFDSFNVLRIHMNIHYRNFECEECSTPFITQRTLRNHQSISHKKGEFKCSHCDKIYDTRSKMLKHVKAIHIDGKNRIKCPYCEEKLINYRRKREHMEKVHGVEPKDIRCMACDKTFTSKSKLTTHTNRIHLMQRKYKCDSCEMRFFKRADLASHKLKHTGERAYKCDICGKTYVRKPTLREHMRTHETGSAKCRFKCEHCGKAFVYKKSWRKHMRSIHSEIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -