Clyc021140.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01009162.1:70118-76920[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0061 0.49 11.6 0.4 1 23 24 47 24 47 0.94 2 28 0.00089 0.071 14.2 0.2 2 23 68 90 67 90 0.95 3 28 0.0001 0.0082 17.2 0.2 1 23 95 118 95 118 0.96 4 28 0.021 1.7 9.9 0.2 1 23 123 146 123 146 0.97 5 28 0.00033 0.026 15.6 1.2 2 23 149 171 149 171 0.97 6 28 0.095 7.6 7.8 0.3 2 21 175 194 174 195 0.96 7 28 0.0032 0.25 12.5 1.0 1 23 249 272 249 272 0.96 8 28 0.053 4.2 8.6 1.3 2 23 344 366 343 366 0.94 9 28 3.3e-06 0.00027 21.9 0.0 3 23 377 398 375 398 0.96 10 28 0.0019 0.16 13.2 2.0 2 23 403 425 402 425 0.91 11 28 0.0046 0.37 12.0 1.6 2 23 431 453 430 453 0.93 12 28 6.3 5.1e+02 2.1 0.8 1 12 457 468 457 471 0.78 13 28 0.0031 0.25 12.5 2.0 1 23 501 523 501 523 0.95 14 28 0.35 28 6.1 0.0 3 23 552 573 550 573 0.89 15 28 0.00092 0.074 14.2 0.1 2 23 594 616 593 616 0.97 16 28 0.003 0.24 12.6 1.2 1 23 621 644 621 644 0.94 17 28 0.25 20 6.5 0.2 1 23 649 672 649 672 0.95 18 28 0.00046 0.037 15.1 1.7 2 23 675 697 675 697 0.95 19 28 0.021 1.6 9.9 1.3 2 22 701 721 700 724 0.91 20 28 0.0095 0.76 11.0 2.4 1 21 776 796 776 799 0.90 21 28 0.028 2.3 9.5 0.1 3 23 828 849 826 849 0.93 22 28 0.00071 0.057 14.5 0.2 2 23 872 894 871 894 0.94 23 28 0.0002 0.016 16.2 0.0 3 23 901 922 900 922 0.94 24 28 0.0061 0.49 11.6 3.0 2 23 927 949 926 949 0.93 25 28 0.002 0.16 13.1 2.7 1 23 954 977 954 977 0.95 26 28 6.9e-06 0.00055 20.9 4.2 1 23 981 1004 981 1004 0.98 27 28 0.00048 0.038 15.1 0.8 2 23 1011 1032 1010 1032 0.96 28 28 0.0015 0.12 13.5 3.5 1 23 1038 1060 1038 1060 0.97
Sequence Information
- Coding Sequence
- ATGTTGTCCATGTCATCAGATGGAATATCCATGGACTTACCATCGCAAGTGGTCACCGCCATCCgcggatatctTTGTGAATTGTGCCATGAACCGTTCACGTCGTATAGCGATGTGATTGACCACTTGATTAGTAAACATGATCTAGAGTATGACAGAGATGTGGAAATGTCCTTTGAGGAGTACATGCTGTCGGATTCACGGTGTCAGTACTGTGGAGAGCAGTTCGCGTATTTCGGCTACCTTATCACTCATATCAATAATGTCCATCCACAAAACTGTTTCGTCTGCGATGACTGCGGTCTCACGTTTAATAAGGAGAGGGCTTTAAGTATCCACATCAGGTTTAATCACCGTCGGGGCGGTTATCCTTGTGACGAATGTTCGGATGTTTTCGAAAGTCTAGGGTCGATGGAGAAACATAAAAACACGTACCACTTTAGGAAATGTAAGACTTGTAACATGAGTTTCCCGTCAAATATTCTTCTAAAGAAGCATAGGCAGATTGAGCATGCTGATAATAAGTGTCCGCACTGTGCGACAAAGTACGAATCGCGACGCGGTCTGCTACTTCATTTGCGTGCTTGTAATTATAAAtcagtatttaaaaagaatgagTCGAAAAGCCTGAATCGCGAAAAGATCTTGGAACCAAAGCCCCAGAAGAACCTATACCAGAAACGTCAAAATATCGTCACCATTCTAAACATGTCGACGGTAACACCGTTTAGGTTCTATGCGAAATTCTCTTGTTTCTACTGTCCAGAACAGTTCACTGAATTTAAGGACTTAAAACAGCATACATTGGTGGAACATCCTGTATGCGATTTGAAGTCCACATGCATGAAGTGGGTGGTGGATGGCTACATGGTGCGGATAGACGTATCGTTGGTTGCGTGCAAAGTATGCTGTGAGTCGATGGACAATTTCGAAAATTTGATAGATCACTTAATCGTCAAACATAATGCGGATTACGACAAGTCTGTTACGGAATGTTTTGAGCCTTTCAAACTGTCGGAAGAAAGTATTCATTGCCCACATTGTAGCAGCGTCTTTCAGTACTTTGCGACACTTCTAAGGCATATAAACGCTGAGCATTGCAACAGTTTGAAGTGCACGTTGCAGATATGTGACTTCTGCGGTCGAAGCTTCAGACGAGCTGCGAATTTAGCTGCCCACATCATAACAGCGCACACAACGTCGTGTGAGTGCGAGGATTGCGGCATACAGTTCAAGAATCAGTGGTGTTTGGCTCGTCATAATGCGAAAGTCCACGATGTTAAGGTCGTCAAGTGTCCGAAGTGCTCTGAGCGATTCCAGTCCCAGTACCACAAGCAGAGACACCTGATTGCAGTCCACGACATTGGACACAAATGTCACCACTGTCAGCATGAAGTCGCGCAAAGCAAGTACCAGCACCTCAACTCTGAAAGAAGGAGGCATAATTTGAAAATCCTCTTCGAAAGTACATCGATAATACCGTTTAAGTGGCGCGGCAAGTACCTCTGCTTTTATTGTGGCAAGGAGTGCGCAGATTATGCTGAATTCAAGAAACATACGATATCTCACAGTTTATCTATAGATCAGGAGTACGACAATAAGTTCATCAAACGGACGAACGATGAGATTAAACTTGATATATCAGTGATCAATTGTGAATTATGTAATGAGCCGTTTACGTCAGTCGATGAGATAGTCGATCATCTAATAGGTAAACATGATTTGGAGTATGATAAAGATGTTGATATGCCTTTCCAGGAATATATGCTGGAAGAATCGAGATGTCAGTACTGCGGAGTACAGTTTGCGTATTTTGGCTATCTCATAATTCACATAAATACCGCTCACCCGCAAAACTGCTTTGTGTGCAATGATTGTGGACTGACCTTCAATAAGAAGAGGAGTTTGGGCTTTCATATACGGTACAACCATCGACGAGGTGGCTACTTATGTGATGAGTGTCCAGATCTCTTTGAATCTCAAGGATTGTTGGACAAGCACAAAAACACATTTCACTTTAGGAAATGCAATACTTGTAACTTGAGTTTTGTGTCGTACAGTCTCCTGAAGAAACATAAGCAGCTGGAACATTCTGATAACAAATGTCCGTACTGTGAGCAAGCCTATCAGTCACGACAAGGTTTGATACAGCACTTGCGCGGTTGCAAACACAAGATTATAGTTAAAAGCGATAATGAAACAACTCTTCACTCTCAGAACTTATTAGAACCTAGAAAACCGCAGAAAAATCTAAcgcaaaaacggcaaaatattGTTTGCATCCTGAACATGTCAACAGCGATTCCTTTTAAGTTTTTCGCTAAGTTCTCCTGTTTTCATTGCTCGAAGAAGTTCACGGAATTCGATGAGCTGAAGGAGCACACAGTTGCAGAACATCCCGTTTGTGATTTGAAGTcgaaatgcataaaaaaatgtaaaggagAACGAGCTGTCGTTAGGATAGATGTGTCGTCACTAGCTTGTAAGGAATGCGGTGATACCTTTGAAGACTTCGACACTTTAATAGAccatttaattaacaaacacGACGCGGATTACGACAAAGAAGTCACAGGATGTTTTGAACCTTTCAAggttattaaagataatattcCTTGCCCTCATTGTCCGAACACATTTAGGTACTTTGCGACTTTAGTTAGGCATATTAACGCTGAACACTGTAACAATAATAGGATATGTGATTTCTGCGGCCGGTCATTCCGGAGCGCTGCAAATTTAGGTGTTCATATAATCTACGCGCATACAGGCTCTTGCGAATGTGACGTCTGTGGGATGAAGTTCAAGAACCAATGGTGTCTAGGTCGTCATAAGGCGAAAATTCACGATGTGAAGGATTTCAAGTGTCCGAAATGTCCCGAGCAGTTTCAGTCGCAGTATCACAAGCAGAAACATCTGATCCAAGTCCACGACATTGGCCACAAGTGCACCTACTGCGGGCGAATGTTCACGAGGAATTCCTTCATGAAAGACCACATCAGAAGGATACATTTGAAGGAGAAGAACGTGCCTTGTTCGGTTTGTGATGAGAAGTTCTTCGACAACCATCTGCTGAAGTTGCACATGGTCAAACATAATGGGGATAGAAAATTTACGTGCAATATTTGTGATAAAACTTTCCTGAGGCGAAGCAATCTAAGTTGTCACATGGATATGCATAAGAAATATGGCCACGTTGAAGCGTAG
- Protein Sequence
- MLSMSSDGISMDLPSQVVTAIRGYLCELCHEPFTSYSDVIDHLISKHDLEYDRDVEMSFEEYMLSDSRCQYCGEQFAYFGYLITHINNVHPQNCFVCDDCGLTFNKERALSIHIRFNHRRGGYPCDECSDVFESLGSMEKHKNTYHFRKCKTCNMSFPSNILLKKHRQIEHADNKCPHCATKYESRRGLLLHLRACNYKSVFKKNESKSLNREKILEPKPQKNLYQKRQNIVTILNMSTVTPFRFYAKFSCFYCPEQFTEFKDLKQHTLVEHPVCDLKSTCMKWVVDGYMVRIDVSLVACKVCCESMDNFENLIDHLIVKHNADYDKSVTECFEPFKLSEESIHCPHCSSVFQYFATLLRHINAEHCNSLKCTLQICDFCGRSFRRAANLAAHIITAHTTSCECEDCGIQFKNQWCLARHNAKVHDVKVVKCPKCSERFQSQYHKQRHLIAVHDIGHKCHHCQHEVAQSKYQHLNSERRRHNLKILFESTSIIPFKWRGKYLCFYCGKECADYAEFKKHTISHSLSIDQEYDNKFIKRTNDEIKLDISVINCELCNEPFTSVDEIVDHLIGKHDLEYDKDVDMPFQEYMLEESRCQYCGVQFAYFGYLIIHINTAHPQNCFVCNDCGLTFNKKRSLGFHIRYNHRRGGYLCDECPDLFESQGLLDKHKNTFHFRKCNTCNLSFVSYSLLKKHKQLEHSDNKCPYCEQAYQSRQGLIQHLRGCKHKIIVKSDNETTLHSQNLLEPRKPQKNLTQKRQNIVCILNMSTAIPFKFFAKFSCFHCSKKFTEFDELKEHTVAEHPVCDLKSKCIKKCKGERAVVRIDVSSLACKECGDTFEDFDTLIDHLINKHDADYDKEVTGCFEPFKVIKDNIPCPHCPNTFRYFATLVRHINAEHCNNNRICDFCGRSFRSAANLGVHIIYAHTGSCECDVCGMKFKNQWCLGRHKAKIHDVKDFKCPKCPEQFQSQYHKQKHLIQVHDIGHKCTYCGRMFTRNSFMKDHIRRIHLKEKNVPCSVCDEKFFDNHLLKLHMVKHNGDRKFTCNICDKTFLRRSNLSCHMDMHKKYGHVEA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -