Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00015 0.33 11.6 4.7 5 41 29 62 26 63 0.85

2 6 2.7e-05 0.058 14.0 1.0 19 41 88 107 83 109 0.91

3 6 0.039 84 3.9 0.5 17 30 114 127 107 136 0.78

4 6 0.00014 0.31 11.7 2.1 14 40 139 162 127 165 0.83

5 6 0.0035 7.6 7.3 0.4 18 39 171 189 167 193 0.74

6 6 0.48 1e+03 0.4 0.5 7 25 189 206 187 209 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00015	0.33	11.6	4.7	5	41	29	62	26	63	0.85
2	6	2.7e-05	0.058	14.0	1.0	19	41	88	107	83	109	0.91
3	6	0.039	84	3.9	0.5	17	30	114	127	107	136	0.78
4	6	0.00014	0.31	11.7	2.1	14	40	139	162	127	165	0.83
5	6	0.0035	7.6	7.3	0.4	18	39	171	189	167	193	0.74
6	6	0.48	1e+03	0.4	0.5	7	25	189	206	187	209	0.72

Coding Sequence: ATGGTGTACGGCAAACAACTTCCGGTTGAAGTGCCAAGACTTGTCCCCTTCATGTACAATCCGTTGAGGAAAGAGCTGTTGCTGAAGCACGCCAAGATGCACGCAGCGGGCGACAAGTGCTTCGAGTGCGACGTCTGCAACAAGAAGTTCCATCGGAGGAACAACCTGCGTTCGCACCTGCGCACGCACgagcgcggcgcggcgggcggcgcggcgggcgtggcggcgggcggcggcgcggcggcgccgAGCGCGTGCCTCTGCCTGTACTGCGGCCGCGGCTTCTCCAACTCCTCCAACCTCATCGTGCACATGCGGAGGCACACCGGCGAGAAGCCCTACAAGTGCGACTTCTGCGGGAAGGGTTTCCCGCGCTCGTCGGACCTGCAGTGCCATCGACGGTCGCACACCGGGGAGAAGCCCTGCGTCTGCGGGGTTTGTGGAAAAGGTTTCTCCCGCAGCAACAAGCTGTCGCGGCACATGCGCGTGCACACGGGCCTGAAGCCGTACAAGTGCACGTACTGCGAGCGCGCCTTCTCGCAGAGCAACGACCTCACGCTGCACGTGCGCCGCCACACCGGCGACAAGCCCTACGTGTGCGAGCTCTGCGGGGAGCGGTTCATACAGgcTCGGGAACCAAGTGAGGCATGTCAGGATTTGAAGTTCCCAATTGCAGCCATAAATTAA
Protein Sequence: MVYGKQLPVEVPRLVPFMYNPLRKELLLKHAKMHAAGDKCFECDVCNKKFHRRNNLRSHLRTHERGAAGGAAGVAAGGGAAAPSACLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCGVCGKGFSRSNKLSRHMRVHTGLKPYKCTYCERAFSQSNDLTLHVRRHTGDKPYVCELCGERFIQAREPSEACQDLKFPIAAIN*

Sequence clustering based on sequence similarity using MMseqs2