Clyc018850.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01003161.1:39315-45439[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-09 7.1e-06 26.3 0.1 1 43 219 261 219 263 0.92 2 2 0.84 9.9e+02 0.2 0.1 32 43 459 470 459 471 0.92
Sequence Information
- Coding Sequence
- ATGGATGATTTACTAACAGCGAAGCCGGAGAGCATATTGTTCGATAAGTGCAAGTGCTGTTTAGGTGATGGAGAGTTGAAGGATATGTGGTCGGAGTACTGTACGGGTGGCAGGAAGGAAATTTATGGCGAGATGCTTGCCGAATGTTTCGACATAACTTTAAAGCATATGATACAAACGGACAGTCACTTGGAACAAATCTGTGACTCATGTATATGCAGGCTGCGAGATGCACTGGATTTCAAGAGAGAGGTGATCGCCTGCGAGCAGCTGAGATATGAACACTTGAATAATGGTCTAAacacagtaataaaatatgaagcaATAGATGACGAGGAACCAACTTTGAACAATGAGGAGGAATTGGAAATAGATAACGAGACAGAGCAGTACATGGACGATGGCACGATAGAGGACAACGGAACTGAGTGTAGCTATGAGGTGCAGATGTTTGAGGATGTGCAGTACTTGGAGATCGATGATGTCGATATTGATGCAAAAGAAGACATAGACATTTCATCGGCATCAACACAAAAATCTATCACCAAATTGAAACACACTGAGACTATATCAGATCAAGCGGAGGAGGAACCGAAGAGGAAATGGCCTCAGAAGAGGAAAAAGCATGAACGCCTAAAAATATACAAGCAGTACACCAGGGAGGATATGATGAAAGCTCTGGACTCTGTGAAGAGTAACTCTTTGAGTATATCAGATGCAGCTAAGACGTACAAGATACCGAGGAAGACGTTGACGGCTAAGCTCCGTGAGGCTGAGCAAACGGAGTCCAATGAAAAGCAAGACAAAGCGACgcgctacttcaatttcattgaTGAAGTGAAGAAAATCCTAACCTACACGAACGCTGTTCCGTTCAAAACTAAGTCAGCTAGGTATTTCTGCGCGTACTGCTCTACAGACGGTCCCTACTTTGAGGAACCAGATGATTTGAGGACTCACACACGAACCAAACATGTGGATGACAGAACGAGAAACATTGAGTTGGTTCTCCGGCCACAGTGGCAGAACGAGGTCCTGAAAATGGATATAGATGCTCTACATTGCACTGTATGTTGTACCATCCTACCGACGTGGAACACCATGTTTTCTCATCTAGAAGACACCCACAATGTCACCTTAGACGAAGCGTACACAAGGGTCATACCATATATTTTGAAACGGGATTTAAAATGTGCTCTGTGCAACGATAGCTTCCCAAACTACCACCATCTGGACGGCCATATGAATTCGCACTACTCAAGCTATATATGCTCGGAGTGTGGTGACACTTTCCTCTCTTCAACGAGACTGAACAAGCATCTAAAAGTTCATATGACAGGACGACATCCATGTGAAGTCTGCGGCAAGGTGTTTACGTTAGAAAAATATAAGCAGAAGCATTATGACCATGTTCACAAGCAAGAGCATAATATTAAATGCCTCTACTGCCCGGAAAAATTCTATGGCACATTCCAAAGACATCTCCACGTAACGGAATGTCATAAAGAGAAAATTAAAGTGACTACATGTGAATTATGTGGGTTACGGTTTGATTGGAAGCCATACTATCATGCACACATGCGAAGGAAACATAATATTGTGTAA
- Protein Sequence
- MDDLLTAKPESILFDKCKCCLGDGELKDMWSEYCTGGRKEIYGEMLAECFDITLKHMIQTDSHLEQICDSCICRLRDALDFKREVIACEQLRYEHLNNGLNTVIKYEAIDDEEPTLNNEEELEIDNETEQYMDDGTIEDNGTECSYEVQMFEDVQYLEIDDVDIDAKEDIDISSASTQKSITKLKHTETISDQAEEEPKRKWPQKRKKHERLKIYKQYTREDMMKALDSVKSNSLSISDAAKTYKIPRKTLTAKLREAEQTESNEKQDKATRYFNFIDEVKKILTYTNAVPFKTKSARYFCAYCSTDGPYFEEPDDLRTHTRTKHVDDRTRNIELVLRPQWQNEVLKMDIDALHCTVCCTILPTWNTMFSHLEDTHNVTLDEAYTRVIPYILKRDLKCALCNDSFPNYHHLDGHMNSHYSSYICSECGDTFLSSTRLNKHLKVHMTGRHPCEVCGKVFTLEKYKQKHYDHVHKQEHNIKCLYCPEKFYGTFQRHLHVTECHKEKIKVTTCELCGLRFDWKPYYHAHMRRKHNIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359682;
- 90% Identity
- -
- 80% Identity
- -