Basic Information

Insect: Cecidostiba semifascia
Gene Symbol: -
Assembly: GCA_900474235.1
Location: UCQR01013881.1:25435-26907[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0022 0.23 12.5 0.3 7 23 98 114 89 114 0.91

2 6 0.041 4.1 8.6 0.9 1 23 129 151 129 151 0.95

3 6 2.1e-05 0.0021 18.9 0.7 1 20 166 185 166 188 0.93

4 6 2.5e-05 0.0025 18.7 0.6 2 23 288 309 287 309 0.94

5 6 6.9e-06 0.00069 20.4 6.8 1 23 315 337 315 337 0.99

6 6 0.00012 0.012 16.5 6.4 1 23 343 366 343 366 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0022	0.23	12.5	0.3	7	23	98	114	89	114	0.91
2	6	0.041	4.1	8.6	0.9	1	23	129	151	129	151	0.95
3	6	2.1e-05	0.0021	18.9	0.7	1	20	166	185	166	188	0.93
4	6	2.5e-05	0.0025	18.7	0.6	2	23	288	309	287	309	0.94
5	6	6.9e-06	0.00069	20.4	6.8	1	23	315	337	315	337	0.99
6	6	0.00012	0.012	16.5	6.4	1	23	343	366	343	366	0.98

Sequence Information

Coding Sequence: ATGAGTGGAAGCCAAAGTGGAGCAATGTCTTTGGCCAATCCATCGGCCATCCACCTTGGCCAAATACTGGCCCCAGGCAGCAATGAGACCATTTCCATAGTCATTCCACTATCGGCTCAGCTGGCTACTCTGTCAAGAAATGCTGCTGTACAACAGCAGGTGGTGTGCAAGCAGGAACCCATTGATCATGCAGACAAAAAGCCACCATCACCTAAACGACCCAAGACTAATCCTCCCCGAATAAAAGAGGATAAAACTAAAGGTTGTCCCTATCCCAACTGCAGTAGATACGGCAGGGCATTTTCAAGGGCTCATGACTTGAAGCGTCACATAGCCAGACACGAGTCAAGGGAGAACAAAACAGAGCCATCACACCAGCAGATTCACCCATGCTTAATCTGTGGTGCTCACTTTTACAACGAACAGATACTACAGAGGCACAAGGCCATTCACGAAAATGGCGCTAATTCGATAACGTCTACTAGCGGACCTCCCTACACTTGTAATTTCTGCAAGAAAACATTTGAACAAGAGAGCCTTCTCAATGCTCACTTACCCATGCACATAAAGAGCGAGCCTTTCCTCTCGTTTCAGCACTCGACGGGCATCCCATTGACGTCGCGCTACCAGCCGCCAAACGGTCCACCCGCAGCCCTGCCACCGCCTCCGCCAGGAATAGTGATGCCAGGAGCGTCGGCGTCGTCATTCGGCTCCTCCGACGACGACTACCGTCTCGAAgatatgctgctgctgcgcaaaAATGTTCCGAATCATCACAAGGCGCCAACGCACCTTGGTAGTGGTGCATCGGCCTCCtcctcgtcttcgtcgtcgcccTCGTCCAGTGCGACCTCCAAGATTCGCTGCGAGTACTGCAGCAAGACATTTAAGACTAAGTGGACGTTGAGCTCGCATGTGGCCGCGCACGAAGGCCGCTTTCAGTACCAGTGCTGCATCTGCAACAAACGCTTTGTGAGAAAGAGCCATTACGAGAGCCACGTTCGATCGCACGATGCCGCCAGGCCCTACGTCTGTGAGCACTGTGGCAAAACTTTCAAAGAGAGCAAGCATCGAAGGGAGCATTTGAAACGAAAGCACCCGAGCAATAGAACCGCCATACAGTCGTTGTTGGATAGCCTCAGTGCTTGTGTAAACGAGGAAgccgcggctgcagcagctgagCAGGCAAAGCTCACCATACTTATGCCGATGAATTTCAGCACTTAA
Protein Sequence: MSGSQSGAMSLANPSAIHLGQILAPGSNETISIVIPLSAQLATLSRNAAVQQQVVCKQEPIDHADKKPPSPKRPKTNPPRIKEDKTKGCPYPNCSRYGRAFSRAHDLKRHIARHESRENKTEPSHQQIHPCLICGAHFYNEQILQRHKAIHENGANSITSTSGPPYTCNFCKKTFEQESLLNAHLPMHIKSEPFLSFQHSTGIPLTSRYQPPNGPPAALPPPPPGIVMPGASASSFGSSDDDYRLEDMLLLRKNVPNHHKAPTHLGSGASASSSSSSSPSSSATSKIRCEYCSKTFKTKWTLSSHVAAHEGRFQYQCCICNKRFVRKSHYESHVRSHDAARPYVCEHCGKTFKESKHRREHLKRKHPSNRTAIQSLLDSLSACVNEEAAAAAAEQAKLTILMPMNFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00739372;
90% Identity: iTF_01487282;
80% Identity: -