Csem000178.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- -
- Assembly
- GCA_900474235.1
- Location
- UCQR01084330.1:23090-29310[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0015 0.15 13.1 0.2 5 22 2 19 1 19 0.93 2 17 0.033 3.3 8.9 2.5 2 19 62 79 61 81 0.95 3 17 0.24 24 6.2 7.0 1 23 88 110 88 111 0.95 4 17 0.012 1.2 10.3 1.1 1 23 191 214 191 214 0.97 5 17 0.002 0.2 12.7 1.5 1 22 219 240 219 240 0.95 6 17 0.0019 0.19 12.7 4.1 1 23 247 270 247 270 0.96 7 17 0.0099 0.99 10.5 0.1 2 20 278 296 277 298 0.94 8 17 0.0028 0.29 12.2 1.1 1 23 759 782 759 782 0.97 9 17 2 2e+02 3.2 0.5 1 11 815 825 815 833 0.89 10 17 0.047 4.8 8.4 0.4 2 23 844 866 843 866 0.94 11 17 0.0042 0.42 11.7 0.1 1 23 935 960 935 960 0.90 12 17 0.048 4.8 8.4 1.1 1 21 967 987 967 988 0.96 13 17 4.5e-05 0.0045 17.9 0.5 1 21 1000 1020 1000 1021 0.95 14 17 0.0012 0.12 13.4 1.0 2 21 1034 1053 1033 1054 0.93 15 17 6.5e-05 0.0066 17.4 0.3 1 20 1081 1100 1081 1102 0.93 16 17 6.5 6.5e+02 1.6 5.1 1 21 1111 1131 1111 1134 0.95 17 17 3.5 3.5e+02 2.5 0.8 2 20 1144 1162 1143 1163 0.93
Sequence Information
- Coding Sequence
- ATGGTCTGCAGCAAGACCTTCAATACATACTCCAATCTGTATGCCCACATGAAACGCCGTTGTCAATCGAAGTGCCGTACGTATTATTGCAACGAATGCAGCTTCAACTGCACCTGCGAGTCCGTACTCGTGAGACATCTCAACAAGCAACATCCGGGACTCTTTGTCCTCGATAATACGGTCAAGTGCTGCGTATGCGACCAGACTTTCGAGGATGGCAAGCACCTCAAGAAACACGAGACCGGATGTGGCGCGTCATTCTATCATTGCAAATTTTGCTCCTATAGGCCTAAGTATCAggagaatttgaaaaaacacCTGCTCACGCACCATGCTGATAAAGTCCGCAATGAGGATATCCAGGATATTCTTAAACAGTCGGTTTATATGCCCAAACGTACCAAGACACAGAAACAGAAAGTTGGGCTGATAATTTGTTCAAAAGTTTGCGATGAACCGAAAGAAATCAGCAAAGTAACTTCGAAGACCGTCTACTGTCCGAAATGTGACCAAGATTcggaatacaaaaaaggtttCCGTCATTGTCACATCTGTAAATCAGTTTTACGCTATCGATGCAACGAATGTAACGGCATATATCGAGGTCTAGCGTCACTCTACCGACACATTCACAGACAACACGGACAAATGCATTACGAATGCGAAAACTGTGGAAGATGCTTCTCTTTCTTCGGCGATGTTAACGAGCATCGCAAGACCTGTGGGCAAGCGCCCCGTTTCGAGTGCAAAATATGCTTTTTCAAGacaagatataaatataacttaaGAAATCACATGTTCAAAATACACGACGAGAACCGCCAGAATTTAGTCTGCCAGGACTGCGGTGCACAGTACAAGACAGAAAGGACGATGAACAAGCACATGGACAATTGCGAGAGACGCATCATTAGAATGACGTTGGGCCAAGGGTCCGACATCTTCTCACCTTCCACGATGAGCAAGAGGATGCCTAATATTCTCAAGAGGcatgagagaaagaaagaatcatCAAATACTACAACTGCTTTAAAGATAAATGGtaaaattaacattatatCATTAACAGTCGTTCCAGATAAAGTACCAAATGATAATCAAGATCTTTTAAATGAAGATGAATGGAAAGGTTCATCAGATGATTCAGatattgaaataatatctTGCTCAATCAAACCCAAGAAAAATACGGCAAAACATGTTAAAACTAAAGCAAAATGTTTGACACCTGTTTTCAACCAGtccaaaacaaaattaaaaaatgtagcaTCAATTCTTAAgcaatcaaaaacaaaattaaatagcATTATACCAGTTTCTAAGCAACATAAATCTCTTTTAAGATTAAGTAATCATActgtttcaaaaaataaaataattgatgaaaCTGAAATTTCAATTGGAGATCTATTAGATTTTCCAGaGAATAATGAATTTCCAAGTGttaatgaacattttttaaatcatgaaAATAATATGTTGAATAAAGAAGGTAAAGATACCTCaatggatttttttcaacctgatgatcaaataaataatggcCTTGATTTTGaaaatgaTATAACTGTTGTTACACCACAATCAATAGACAAAAATGAATCAAACAGTGTACTTAATCAGTCCAAAAATAAATCTGAAGTAACTGAGCAGTCTAAAACTCTTATAACATCAAGTactaatattgattttaaagaCCAAATGACTGATGATGAAACTGGAATTTCATTTGATGACCTATTAGATTTGGCtgatgatgaaaaatttcCGTGTATCAATGACGATTTGAGTAATGAAAATGCttctaataaaaaagttgaagaTACGTCTAAAAATTGTCTTCCACCTAATGAAATCTTAAATAATTACGTTGATCCTGaagATTATGTGAATGTTGTTACATCTCAATTAAGAGACAGAactttgtttaataaaagtgaTGCAACTAAAGTTCCCATTTTATATGCAAACAGTGTAGGTTGTGAAAcagatatttttgaaatagaTGGTCTATCAAATGATTCAAACAGCACTTCAAACTGTGATAGTTATGAAAAACGTTTTGTTGACTCATTACCTCAAGATGATCcatctataattaataatgctGCACCCTTAAATATAAACAGCGTTGGTGATACTTTTTTATCCACAAATGATACTGAATCATTGAATTCACTTGTCAGGCTGAAATGTACAAAGTGCTTAGCTTTGCTACAGTGTCCTAAGATAGAGCCACAAATGGTGTGTCAAAAATGTGGCTTGAAATATCAATATCAATGCAAAATATGCACATCAGGTTTCGTTTCCTTATATTCCCTTTATACTCACCTCATAAAGTTTCACAGTCGTGGTGAAGCTGTGcatagtttaataataaaaccacAATATGTTAAAAAGCCTAAGAAGATTAGAAGACTACAATGTGAATCtacagatttttataattgtcaAAAATGTGGTTCAAGTTTTAAATTAGAATCAATAAAGAATAAGCATGAGGCTATTTGTTCAAGAAATCCAAAGCTCAACTGCCCATTTTGCTCTGTCGCGATGAGcttcaaaaaaaatcttaagGAACACATGATCAAGCTTCATTCAGaatcatttgaaataaatgaagCGGATAGTATTATTAATCAGGTTGTCAAggatggaaataaaaaaagaagagatgCAAAAGCCGCGAGCCTCCTTCAGATGCTGCAAGTGGCCTGCTGCCGCAACTGCGATAGTCGCACACCGGTTCACGAACTGGTGGACGGAGAAATGACCTGCGCAATCTGCGGCGAGAACCTTGTCTTCAACTGCGCCGACCCGCAGTGTTCTCGGACCTTCCCGACCCCAAAGGCACTCAGTTCGCACGTGCGCCTGCTGCACATCGAGAAGCGTGACCATTACCACTGCGCCCACTGTCTCTACGCCACGACGAGCAGCAAAGATTTGATAAATCATCAGAAGGACTGCGGTGATCTGGTGATCCTGCCACCACGTCTGTTCGTCTGCCCAAACTGCGACAGGAGTTTTAAGAAAGAACGCTATTTGCAAGTTCACCTACAGCGCCCTGAAGCTTGTGTCCGCCAGAAACAGCGCGAGCTTGTCTGTCCAAAATGCAACAGGACGTTCCGGTTACAGCGCTGGCTTGAGAATCATCGCTGCGAGCCCGTGGCGACGCCGTTGGAGCCCCCGGAGCCGATAGAGCTGCCCTCCACAGAGCTCGTTCCACTCCAAGAGCCAGAATATCCTTGTCCTGATTGCGGTAAAGTCTTTAAACAAATGCGCTGGTTTAATACCCACAAGGAGAAGTACTGCGACAAACAACGAGTACTTTATCGCTGTGCCCACTGTCGCTACCAAGGTttcgaaaagaagaagctcAAGGTGCACATGAGGTGCGCTCACATACATCTGTGCACTGGAAAGAAGCTGAGCTGCATGAAATGCGGCACTAAGTGGACAAGCATTTACTGTCTCAACAGGCATCTGGACGACTGTAGCGGCGACTACGAGACCGAGAGAGTAAAgatgaggagaaaaaagaaaaagacttggggagaaatttttgaatacgTTTAA
- Protein Sequence
- MVCSKTFNTYSNLYAHMKRRCQSKCRTYYCNECSFNCTCESVLVRHLNKQHPGLFVLDNTVKCCVCDQTFEDGKHLKKHETGCGASFYHCKFCSYRPKYQENLKKHLLTHHADKVRNEDIQDILKQSVYMPKRTKTQKQKVGLIICSKVCDEPKEISKVTSKTVYCPKCDQDSEYKKGFRHCHICKSVLRYRCNECNGIYRGLASLYRHIHRQHGQMHYECENCGRCFSFFGDVNEHRKTCGQAPRFECKICFFKTRYKYNLRNHMFKIHDENRQNLVCQDCGAQYKTERTMNKHMDNCERRIIRMTLGQGSDIFSPSTMSKRMPNILKRHERKKESSNTTTALKINGKINIISLTVVPDKVPNDNQDLLNEDEWKGSSDDSDIEIISCSIKPKKNTAKHVKTKAKCLTPVFNQSKTKLKNVASILKQSKTKLNSIIPVSKQHKSLLRLSNHTVSKNKIIDETEISIGDLLDFPENNEFPSVNEHFLNHENNMLNKEGKDTSMDFFQPDDQINNGLDFENDITVVTPQSIDKNESNSVLNQSKNKSEVTEQSKTLITSSTNIDFKDQMTDDETGISFDDLLDLADDEKFPCINDDLSNENASNKKVEDTSKNCLPPNEILNNYVDPEDYVNVVTSQLRDRTLFNKSDATKVPILYANSVGCETDIFEIDGLSNDSNSTSNCDSYEKRFVDSLPQDDPSIINNAAPLNINSVGDTFLSTNDTESLNSLVRLKCTKCLALLQCPKIEPQMVCQKCGLKYQYQCKICTSGFVSLYSLYTHLIKFHSRGEAVHSLIIKPQYVKKPKKIRRLQCESTDFYNCQKCGSSFKLESIKNKHEAICSRNPKLNCPFCSVAMSFKKNLKEHMIKLHSESFEINEADSIINQVVKDGNKKRRDAKAASLLQMLQVACCRNCDSRTPVHELVDGEMTCAICGENLVFNCADPQCSRTFPTPKALSSHVRLLHIEKRDHYHCAHCLYATTSSKDLINHQKDCGDLVILPPRLFVCPNCDRSFKKERYLQVHLQRPEACVRQKQRELVCPKCNRTFRLQRWLENHRCEPVATPLEPPEPIELPSTELVPLQEPEYPCPDCGKVFKQMRWFNTHKEKYCDKQRVLYRCAHCRYQGFEKKKLKVHMRCAHIHLCTGKKLSCMKCGTKWTSIYCLNRHLDDCSGDYETERVKMRRKKKKTWGEIFEYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -