Basic Information

Insect: Cecidostiba semifascia
Gene Symbol: RREB1
Assembly: GCA_900474235.1
Location: UCQR01126011.1:268-8343[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.004 0.4 11.7 0.4 1 23 46 68 46 68 0.96

2 14 0.0004 0.04 14.9 0.1 1 23 84 106 84 106 0.97

3 14 2.8e-07 2.8e-05 24.8 1.3 1 23 112 135 112 135 0.98

4 14 1.1 1.1e+02 4.0 0.0 2 23 329 352 328 352 0.89

5 14 0.16 16 6.7 1.6 2 23 358 380 358 380 0.95

6 14 1.6 1.6e+02 3.5 0.5 1 19 429 447 429 449 0.90

7 14 0.086 8.7 7.6 0.1 1 23 578 600 578 600 0.96

8 14 3.1e-05 0.0031 18.4 0.3 1 23 609 631 609 631 0.98

9 14 0.0015 0.15 13.1 2.8 1 23 637 660 637 660 0.97

10 14 0.00056 0.056 14.4 3.0 1 23 1047 1070 1047 1070 0.97

11 14 0.01 1 10.5 2.3 1 23 1459 1483 1459 1483 0.97

12 14 3.8 3.8e+02 2.4 3.3 1 23 1645 1668 1645 1668 0.89

13 14 0.014 1.4 10.1 0.4 2 23 1720 1741 1719 1741 0.94

14 14 3.9 3.9e+02 2.3 5.6 1 21 1747 1767 1747 1768 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.004	0.4	11.7	0.4	1	23	46	68	46	68	0.96
2	14	0.0004	0.04	14.9	0.1	1	23	84	106	84	106	0.97
3	14	2.8e-07	2.8e-05	24.8	1.3	1	23	112	135	112	135	0.98
4	14	1.1	1.1e+02	4.0	0.0	2	23	329	352	328	352	0.89
5	14	0.16	16	6.7	1.6	2	23	358	380	358	380	0.95
6	14	1.6	1.6e+02	3.5	0.5	1	19	429	447	429	449	0.90
7	14	0.086	8.7	7.6	0.1	1	23	578	600	578	600	0.96
8	14	3.1e-05	0.0031	18.4	0.3	1	23	609	631	609	631	0.98
9	14	0.0015	0.15	13.1	2.8	1	23	637	660	637	660	0.97
10	14	0.00056	0.056	14.4	3.0	1	23	1047	1070	1047	1070	0.97
11	14	0.01	1	10.5	2.3	1	23	1459	1483	1459	1483	0.97
12	14	3.8	3.8e+02	2.4	3.3	1	23	1645	1668	1645	1668	0.89
13	14	0.014	1.4	10.1	0.4	2	23	1720	1741	1719	1741	0.94
14	14	3.9	3.9e+02	2.3	5.6	1	21	1747	1767	1747	1768	0.95

Sequence Information

Coding Sequence: ATGTTGTTCGGGAAAATGACCGCCGAGACTGGACCTGATCACCGCGACGGCGAGAGGCAAACGGATGTTGCATCATCGACACTGgtcgagtcgcagcagcatcagcagcagcagcagcagtcagGAGAAGGAAGCCACCCGTGTCCGGCCTGTCCGCTCGTTCTGTCGAGTTCGCGCGAGCTGACGCACCACCTGCGCGGCCACAACTCACCCCGAAGCACGACCGACTGCAGCGGCGAGGAGGTCGACTACGCCTGCGGCGTCTGCCACAAGGTCCTCAGCTCGGCCAGCTCTCTCGACCGCCACGTGCTCGTGCACTCGGGCGAGCGACCCTTCAAGTGCAAGTACTGCGACATGGCCTTCACGACCAACGGCAACATGAACAGGCACCTGAGGACGGCCCACAGGACGGCCTCGCCGTTCCACAACTGTACCGATTTCGAGGCGAGCAGGGACTCGGAGCGACCGCTCAACAAGCGCAGGCTCATCCAGGAGGagtacaacaacaacaagatcGTCAAGAGTAGCTCGCCCGAGCTCCTCATCTCCCAGGCCAAGAGACGCTGTCCGGACTACGCCGACGAGGCTGACAGCGAGAGGAGACACAAGATCCTGCTGGGCAACGCCAGAAGCGAGATCCGGGGCGtattttcctctttcttttttttctgtttggTCCTTGATCACAAATATTTCTTGACGGCCTCGCCGTCCCACAGCTGCACCGACTCCGAGGCGAGCAGCGACTCCGAGCGACCGCTCAGCAAGCGCAAGCTCATCCAGGAGGAGTACAACAACAATGAGATCGCCAAGAGGAACTCGCCCGAGCTCCTCGTCCCCCAGGCCAAGAGACGCTGCCCGGACTACGCCGACGAGGCCGACAGCCAGAGGAGACACAAGATCCTGCTGGGCAACGCCAGGAGCGAGATCCGGGGCGGCTACTCGGACTCGTCGCCCGCCGCCTCAGCCGCGGGACTCAGCCTCAGCTGCGCCGTCTGCGGGCGCCAGGACCTGGCCACCTCGGCGCAGCTCGAGGCCCACATGGAGCGCCAGCACCCGGACGTCCCGGCCAAGTGCGAGAGCTGCGAGCTCGGCTTCAAGAACCACCGGGCGCTGAACCTCCACCGATTCATGATCCACTTCAGCGAGGGCGCCAAACAGCTGCGCAACTCCGTCGTCGGCTTCGACGACCTCACCTTCGTCGACTTCTCCTCCGACAAGTTCCCCACCATCGCCAGGGCCGTCTGCGAGCAGTCGCTCCATCGGCCAGCCTCCGGGGAGGCCTACCAGTGCTCCAAGTGCCTCCGGGCCTTTCCCTGCCGATCGGCCCTCGACGCTCACGAGACAGACTGCGGCATCGGCCTCCGCGCTCATCGCCAGAGCGTCGCGAGCAGCGAGTGCGGCAGTGAGCATCGACCGACGCACGCGCCGGACGAGCACTCGGGCAGGGACGACTTCTTCGCCGGCCTGGACCTGCAGAACAAGGCTGCCCTGGCCGAGGCCAAGGAGGGCAAGGACCTCGCCGACATTCAGAGCATCATCAGCCTGACCTCCGGCCCGATCCTCCAGAGCCTCAACCGATCCGACGCCTGCACGCCCGACAACTGCAAGATCAAGCAGAGCTTCGGCTCGTCCGGCTCCTCGGGCACTCCCTGCTCCGAGTACCAGCACGAGGAGGAGGCCCAGGACGCGTTCGCCGCCGAGTTCCGCAAGATGAAGATGAAGGGCGAGTTCCCCTGCCGACTCTGCAGCGCCGTCTTCCCGAACCTCCGGGCTCTCAAGGGCCACAACCGGGCGCACATGGGCGTGGCTCCGGGCATGCCGTACCCCTGCAACATGTGCCCCTACAGCAGCACCGACAAGGCCACCCTCGTCAGGCATCTCAGGTCGCACAACGGCGATCGGCCCTACGAGTGCTCGCTCTGCAACTACGCCTTCACCACCAAGGCCAACTGCGAGCGACACGTGAGGAACCGGCACGGCAAGCTCTCCCGCGAGGAGATCAAGGGCGTGCTCATCTACCATCCCAGCGAGGACTCGACCAACGACGGCAGCCTCGAGAGAGCCTCGCCCAGAGGGCCCGGGACCCTCGTCCGCGACGAGGTGCGCAAGACCCTGGTCTACCCCGGGGAACGCGAACGAGACGAGCTGCCGGTTCCTCAGCATCAGTATCCTCAGTATCCTCAAGCCGGCGAGCTGAGGATCAAGGACGAGGCCAAGCTCAGGCAGCCGGGACTGCCGGGACTCCACGAGCTCTTCCCCAGGCCGGCCCAGCCTCTGGAGCTGACCTACCGCAACGACGAGGCCAAGGAGGACGACGAGTTCGAGTCGAGGTCGTCGGACGGCAGCGTGTCCCTAGTCAGCGAAACCAAAGCGGACGCCGCGCACCAAAGAATCCAGGCCAGTCCGATGGACCTGAAGAAGTCGTCGACCAACAACTCGTCCCAGGCCGAGGACGCGCCCCTCGATCTCAGCATGGACGTGCTCGACCTCAGCCGCAAGGCCAAGgccgcagcagcggcagcagcagccgccgccgccgccgccgcggctcTCAAGGCCGACGCTCTCGACAACGGAGAGGATCTCAGAACGCAGGAGGGTAACCACCACGGCAAGGACCTCTACAATACGACGAACCAGCTGCTGCTGACCCAGGCTCTGCTCAAGGCCGGCCAAAGCCAGCAAAATCCCTCGTCGCTCGAGGCCTTCTACGCGAATGCGCAGATGCTGTACAGGAACTTTGGCACGTTTCCTGCGGCCGCGGCCGGTATCCTTCAGCCGTACCTCTTCAATCCGCATCTCTTCGGACAGGACTACGCCATGAAGGACAGGATGCAGAAGGAGCTGATCCGTGGACTCCAGACCAGCGGGGGAAGCCTCGTGGAGCCACAGGCTCCGAGCTACGGCGCCGCTGCCTTCCCCCAGCAGAGCAGCCGTCCACAACCAGATCAGAACAACTCTGGCTACGCCAATCTCATGTCCTCTGCCAAGCTCACGAGCAAGAGCCTGACACCGTCGTCCAGGGACAAGAGCCTCGAAAACAATTCGCAGTCCTCCAACTCCGTGAAGATGGTCATCAAGAACGGCGTGCTCATGCCCAAGCAGAAGCAGCGACGCTACAGGACCGAGCGCCCGTTCACCTGCGAGCACTGCTCGGCCAGGTTCACCCTGCGCAGCAACATGGAGCGACACATCAAGCAGCAGCACCCTCAGTACTGGAGCCAGAGACCCAGGGGTGGGCACTCGACCCGGGGCAGACCACCGGCGAATCCACCGACGCTTCTGCAGAACCTCGGGCAGACCGCCTCGCACCATCACCTCGCCCAACAGCAGATGTCCCAGGCCTACGGTGGACTGCTGCCGAAGCTCGGACAGCaaatcgctgctgctgctgctgctgctgctgctgctggtggtgacTACGGCAAACACGCCATATCCGACCAGGTCAAGTACGCCATCTTGGCCCAGCAACTGAAaggtggcagcagcagcaagcccAAGGAGAACGACTCCGACGAGGAGCTCGTAATCGACGAAGAGACGGAGAAGGAGCACAGGGAGCCCACCGAGAGGACGCTCAGTCTGCTCAGAGGCAAACTCGAGGCCAACATCGAGAGCAAGGGCGGCAGCGAGGACGTGGACGTGAAGGAGGTCAGGGTGAAGGAGGAGTTCAAGGAAAAGATCAAGCAGGAGATCGACAGCCACATCGAGCACAGGAACGACGAGCACGACGTGCTCAACACCAAAGGGcgaaacgacgacgagtccGACGAGGAGGAGCAAGAGGAGGAGGGGGAGGTGGgggaggaggacgacgacgaggaagtCACCTCCATCGTGCCCGAGGCCATGGTCAAGACGGAGCTGCGCGATCCCAAGGAGGACCAGGAGGATCTGGCAAGCGTATCCGAGATCCTGGACAACGCCTCCCAGCACTACCAGCACTTCCAGTCGCAGTACATGAGCGACGAGGAGGGTCTCGTCGCCTCGACGAGCGACTGCAACCAGTCGGGCAGCGACGAGAAATCGGACTCGGTCAACTCGGCCAATTCCGGCCACTCGTCGAgctcgaaaaagaagaagaaaaagatgaagaaaaagaagaagaagaagtccgCCTACTCGATGGCACCCAACCGGGTGATCTGCCCGCCAGAAGCCCTTCCAGTGCATGCACTGCTCGCTTCTCTTCACCACCAAGTCCAACTGCGACCGCCACCTGCTGCGCAAGCACAAGAACAAGATCGAGAAGCTGCGCAGGACCCGCAGCACCTCGTCGCCGGAGCTCCANNNNNNNNNNNNNNNNNNNNcatcaacaacaacagcagcagcagccagttCGCCATGAGGAACGTGCCCGAGCGTCCTTACAAGTGCAACCAGTGTCCCAGCTCGACCTTCTCCACCCTCGGCAATCTCAAGAAACACAAGTCCACAAAGCACCAGTACCAGCAGCGCCATCTGGCGCCGAAATCACGACCGGACTCGCCCTGCAGCGAACCCCAGCACAGTCCCCAGGACTGCAGTCCGGCTCAGGACGAGACTCAAGTTCAGGATGAGTCTGTCCCTCGAGCCCAGGAATGCAACGTTCAGGAATGCGCTGCACCTCAGGATTgtcagaagcagcagcagcagcagccaggtACCGACCAgagcggctacgagagccagTCGTCCGGGGTCTCGGATAACATGGCCGAGAACCTGGCCGAGCGCCTCGAGGGTATGAGCTCGACGCCGATCGCCGATCCAGCCAAGAACGgcaacatcatcatcaacaacaacaacaacaacaacaacaacaacaacaacagcagcaacaacaacaacaacaacaccgCCTCGAGGAAGAACTCGCCCACCTCGTCGCCGGGGCCCAAcaacagcggcagcagcagcagcgccaacAACTCCGAGGCTGCGCCCTTCAAGTGCCACCTCTGCGACAGCGGCTTCTCCGAGAGGAACGACTGCCTCGAGCATATCAAGGACAACCACGAGCGCTCCTACGAGATGCTCGTCGCCAAGGGTGCCCTGGAGATGGACTTTGACGGTGCCGACGAGCCCATGCCACCAgcgccaccaccgccacccCAGAATCCCAGCGACGGTGAAGGCAGACGGTTTCCCGACTACAGCAACAGAAAGGTCGTCTGCGCCTTCTGCATGCGTCGTTTCTGGTCGGCCGAGGACCTTCGTCGCCACATGCGCACTCACACCGGCGAGCGCCCGTTCTCCTGCGACATCTGCTGTCGGCGCTTCACCCTCAAGCACAGCATGCTTCGCCACCGCAAAAAGTGCGAGTCCTGCGTCGACTCCAGCATGTACGTGGGCACGAGCGGCGACGAGGACACGGGCATGAGCCAACCGCCTACGATAACGCCTCGCTCCCAGCAACAGTCGTCCCAGATGgcgcatcagcatcagcagcagcatcagcagcagcagcgcgcatCTCTACCCCAGGTCGCGAGTGTCGCGACTGCCGACGCTGCACCCAGTGGACTCATGCGGTTCAATCCCTATGAGAAACTGACCACCCTCACGGGTAAACTCACCGCTGGTGTCTCTCCGGCTATCGACCCCAGCAGCGACAACAATGACAACGATCTCATCTCCAACCTACTGGGTATCCGGGACAAGAGCATCATCGACCGGGTACTTCAGGCCTCGGCAGACGACGCGGCCAAGCTTCTGGGTGTCAAGGGAAACCACGAATGA
Protein Sequence: MLFGKMTAETGPDHRDGERQTDVASSTLVESQQHQQQQQQSGEGSHPCPACPLVLSSSRELTHHLRGHNSPRSTTDCSGEEVDYACGVCHKVLSSASSLDRHVLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHRTASPFHNCTDFEASRDSERPLNKRRLIQEEYNNNKIVKSSSPELLISQAKRRCPDYADEADSERRHKILLGNARSEIRGVFSSFFFFCLVLDHKYFLTASPSHSCTDSEASSDSERPLSKRKLIQEEYNNNEIAKRNSPELLVPQAKRRCPDYADEADSQRRHKILLGNARSEIRGGYSDSSPAASAAGLSLSCAVCGRQDLATSAQLEAHMERQHPDVPAKCESCELGFKNHRALNLHRFMIHFSEGAKQLRNSVVGFDDLTFVDFSSDKFPTIARAVCEQSLHRPASGEAYQCSKCLRAFPCRSALDAHETDCGIGLRAHRQSVASSECGSEHRPTHAPDEHSGRDDFFAGLDLQNKAALAEAKEGKDLADIQSIISLTSGPILQSLNRSDACTPDNCKIKQSFGSSGSSGTPCSEYQHEEEAQDAFAAEFRKMKMKGEFPCRLCSAVFPNLRALKGHNRAHMGVAPGMPYPCNMCPYSSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLSREEIKGVLIYHPSEDSTNDGSLERASPRGPGTLVRDEVRKTLVYPGERERDELPVPQHQYPQYPQAGELRIKDEAKLRQPGLPGLHELFPRPAQPLELTYRNDEAKEDDEFESRSSDGSVSLVSETKADAAHQRIQASPMDLKKSSTNNSSQAEDAPLDLSMDVLDLSRKAKAAAAAAAAAAAAAAALKADALDNGEDLRTQEGNHHGKDLYNTTNQLLLTQALLKAGQSQQNPSSLEAFYANAQMLYRNFGTFPAAAAGILQPYLFNPHLFGQDYAMKDRMQKELIRGLQTSGGSLVEPQAPSYGAAAFPQQSSRPQPDQNNSGYANLMSSAKLTSKSLTPSSRDKSLENNSQSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANPPTLLQNLGQTASHHHLAQQQMSQAYGGLLPKLGQQIAAAAAAAAAAGGDYGKHAISDQVKYAILAQQLKGGSSSKPKENDSDEELVIDEETEKEHREPTERTLSLLRGKLEANIESKGGSEDVDVKEVRVKEEFKEKIKQEIDSHIEHRNDEHDVLNTKGRNDDESDEEEQEEEGEVGEEDDDEEVTSIVPEAMVKTELRDPKEDQEDLASVSEILDNASQHYQHFQSQYMSDEEGLVASTSDCNQSGSDEKSDSVNSANSGHSSSSKKKKKKMKKKKKKKSAYSMAPNRVICPPEALPVHALLASLHHQVQLRPPPAAQAQEQDREAAQDPQHLVAGAPXXXXXXXINNNSSSSQFAMRNVPERPYKCNQCPSSTFSTLGNLKKHKSTKHQYQQRHLAPKSRPDSPCSEPQHSPQDCSPAQDETQVQDESVPRAQECNVQECAAPQDCQKQQQQQPGTDQSGYESQSSGVSDNMAENLAERLEGMSSTPIADPAKNGNIIINNNNNNNNNNNNSSNNNNNNTASRKNSPTSSPGPNNSGSSSSANNSEAAPFKCHLCDSGFSERNDCLEHIKDNHERSYEMLVAKGALEMDFDGADEPMPPAPPPPPQNPSDGEGRRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKCESCVDSSMYVGTSGDEDTGMSQPPTITPRSQQQSSQMAHQHQQQHQQQQRASLPQVASVATADAAPSGLMRFNPYEKLTTLTGKLTAGVSPAIDPSSDNNDNDLISNLLGIRDKSIIDRVLQASADDAAKLLGVKGNHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -