Basic Information

Insect: Cecidostiba semifascia
Gene Symbol: SCRT1
Assembly: GCA_900474235.1
Location: UCQR01053043.1:20809-24037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.1e-08 1.1e-06 29.3 1.8 1 23 171 193 171 193 0.98

2 5 0.0002 0.02 15.8 0.4 2 23 203 224 203 224 0.98

3 5 2.8e-06 0.00028 21.7 6.6 1 23 228 250 228 250 0.97

4 5 8.3e-09 8.3e-07 29.6 0.6 1 23 256 278 256 278 0.99

5 5 0.00065 0.066 14.2 0.3 1 20 284 303 284 305 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.1e-08	1.1e-06	29.3	1.8	1	23	171	193	171	193	0.98
2	5	0.0002	0.02	15.8	0.4	2	23	203	224	203	224	0.98
3	5	2.8e-06	0.00028	21.7	6.6	1	23	228	250	228	250	0.97
4	5	8.3e-09	8.3e-07	29.6	0.6	1	23	256	278	256	278	0.99
5	5	0.00065	0.066	14.2	0.3	1	20	284	303	284	305	0.93

Sequence Information

Coding Sequence: atgCCGAGGGCTTTTCTCATCACGAGGCGCCGGTACAATGGCACCGGTGACTTCGAGGAGATCGGCAGGGAATACAGTCCAGAGCGCGGTGTCCGTTTAGCCGAGTACGGCGGTGGTCACCAACAGCCGACGTCGGACGGCGCAAGCGAATGTGGCAGCGAAAGCTCGAGCGAGTGTCCCGAAGAACTATACAACCTGACAAAATTAGCTGAGGTGAGTTTAGCCGCTGCAGCTGGTACACTGGTACATCCGGCAACGAACATGTACCAGAGACCGGCACCTCTGCCAGCGCCGCAGCAGCGGCTCTTCTTCGAGAGGATCGAAGCCGAGAATCAGCAGCTTCACGAGCTCAAGTCATGCAGGAGGGCTGGAGAACGCCAGAGATTTCCTGCTCCGTTTAATCAGCCCATGACAACGATGGACATAGTGGCGACACCGGTACAGTCTCAGAATCCTCTGGAAGCCCATCAGAATTCGAGCTTGCAGCAGCCACAGGACGGCACCGAGGAGCACGAGTGCCCCGACTGCGGCAAAAAGTACTCGACCTCGTCGAACTTGGCTAGACATCGTCAGACTCATCGTTCCCTCGGCGACAAAAAGGCCCGACGCTGTCCCCACTGCGACAAAGTCTACGTTAGTATACCAGCGTTCAGCATGCACGTGAGGACCCACAACCAGGGCTGCAAGTGCCACTTCTGCGGCAAGTGCTTCTCCAGGCCTTGGCTGCTTCAGGGACACATTCGGACTCATAcagGTGAAAAACCATTCAAATGCACGATCTGCAACAAGGCCTTCGCCGACAAGTCCAACCTCCGTGCCCACGTTCAAACTCACTCGAACACGAAGCCCCACGTGTGCGGCCGCTGTGGCAAGGCTTTCGCTCTCAAGTCCTACCTCTACAAGCACGAGGAGTCCTCCTGCATGAGATCGCATCACCAGAAGCGCGAAACATCCGCCAGTCCTACCACCTCTTCCTCGTCCTCGTCAACTTCGCCGAGAACCATCTCATCCTCaccctcgtcgtcgtctcatCCCGCGAGTGTCATTGTCCCACCAcgtaacagcagcagtagtaacCCTAATAATACTCAAACACAacatcagcaacagcaaaCTCCAAACTCAGCCTTCTCCGCGATAATCAGGCACACGGGTATCGAGCAGGAGGTCGCCGAGGCTCAGAGGAGTAGAGACTTGCTGTCAAGGATGGTCATCAGGACGTCCGTCATATCACCGAACCCCGAACATCTCGCCGCGAGGAAGATCGCGGCGCCACTGCATCATCAGCCACCGCAACATCAGCTGCAACAGCCGTCAAATAATCATCaggtttttgattttaacgATCCACAAAGGGTCTCCGCGTTCTCCAGGCCGCAGCCGATGACTTTGAATTTAGCGATCGCCTGA
Protein Sequence: MPRAFLITRRRYNGTGDFEEIGREYSPERGVRLAEYGGGHQQPTSDGASECGSESSSECPEELYNLTKLAEVSLAAAAGTLVHPATNMYQRPAPLPAPQQRLFFERIEAENQQLHELKSCRRAGERQRFPAPFNQPMTTMDIVATPVQSQNPLEAHQNSSLQQPQDGTEEHECPDCGKKYSTSSNLARHRQTHRSLGDKKARRCPHCDKVYVSIPAFSMHVRTHNQGCKCHFCGKCFSRPWLLQGHIRTHTGEKPFKCTICNKAFADKSNLRAHVQTHSNTKPHVCGRCGKAFALKSYLYKHEESSCMRSHHQKRETSASPTTSSSSSSTSPRTISSSPSSSSHPASVIVPPRNSSSSNPNNTQTQHQQQQTPNSAFSAIIRHTGIEQEVAEAQRSRDLLSRMVIRTSVISPNPEHLAARKIAAPLHHQPPQHQLQQPSNNHQVFDFNDPQRVSAFSRPQPMTLNLAIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01274765;
90% Identity: -
80% Identity: -