Csem010087.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- -
- Assembly
- GCA_900474235.1
- Location
- UCQR01072341.1:1-4303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0012 0.12 13.4 3.4 1 23 167 190 167 190 0.97 2 15 8.2e-06 0.00083 20.2 1.1 2 23 197 218 196 218 0.97 3 15 0.14 14 6.9 1.9 1 23 227 250 227 250 0.93 4 15 0.0055 0.55 11.3 3.9 1 23 256 278 256 278 0.96 5 15 5.3e-06 0.00053 20.8 2.6 1 23 283 306 283 306 0.96 6 15 0.014 1.4 10.0 2.1 1 23 312 334 312 334 0.98 7 15 6.6e-05 0.0067 17.4 2.9 1 23 338 361 338 361 0.98 8 15 0.00051 0.052 14.6 0.8 3 23 369 389 368 389 0.99 9 15 0.00032 0.032 15.2 3.1 1 23 395 418 395 418 0.95 10 15 0.04 4.1 8.6 5.2 3 23 638 659 636 659 0.96 11 15 1.7e-06 0.00017 22.4 1.8 1 23 665 687 665 687 0.97 12 15 5.6 5.6e+02 1.9 4.0 1 23 696 719 696 719 0.91 13 15 0.019 1.9 9.6 3.8 1 23 725 747 725 747 0.95 14 15 4.1e-06 0.00041 21.1 1.1 1 23 752 775 752 775 0.96 15 15 0.43 43 5.4 2.1 1 23 781 803 781 803 0.97
Sequence Information
- Coding Sequence
- AAAGGACACCCTCGCTGGAGCCGCAAACAGAGCATCATATCCAGGGTACGCCAACAATCAACTACCAAGTTTGACAAGTCCACTGATCCATCGACTCCAGCCAAAAATCATCTTTCCAAAAGACAGCCATCCAAATCTGCTTCTAATCTCTCGGACAAGCCaaaatctaaaagaaaaagctcggtGCCGTTAAAGGTcattaagaagaagaagatttcCGATTCCGATTCTGACTCAGACTACGAAAAGAGTACAAAAAAGGCCGCCAAACTAAAGACCGAAAAATCTCATCTTCAAACTAAGACGCCTAACAAAACTCCAAAAACGAAGATCTTAGTCGCTCAGTCTAAAAAAGCGAAAGAAGAAGCTTTTAAGAAGAAGCCCAAGTCgctaaaagcaaaaaaagaaacttctGGCAAAGAGGTTGAACACACGAACCCGGAGAAGCCGGAGAAGCTGGATATTGAAAAACTCTATTTTAAATCCCCAAGCGATGGCTTTATTTGCAATGTTTGCAACGAAAACTTCACGCATCGCTTCAAAGTGAAGCTACACATTCGAAGCAAGCATCAACCCCGTGAGGTTTTAAAATGTCTCTACTGCCCGCAGACATATGTGTCGAAGTACTCGCTGAAAACACATATGAACATGCATCAGCAGACAGACAGTAAATACGTGTACCTTTGCTCCAAGTGCGATTATCGCGCCATGTCTAAGCATTCTCTTAACATCCACGAGATCAGAAAACACAGCGATGATTATCAATTTGAATGCGATCACTGTAAGAAGCGGTTCAAGGTAAAGATGGATCTCAAATTCCATCTTGGAACGCACAGCGACTCTCAGCATATGTGTGACATTTGTGGGAAAATGTACACCAGTGCGGAATCGCTGCACAAGCATAGGCGAATGATCCATATCGTCCAGCGAAACTTTAAGTGCACAAAATGCTGGATGAAGTTACAGACTCAGGAAAGCTTGGATCATCATCTTGCGACGCACAATATCACGTACAAATGCGACGTTTGTAACGAGgaatttagtaaaaaatactACATGACTAGACATAAGAAACGTGTCCACTTGGTGGAGAAGAACAAACTCTGCCCAGTCTGTGGCAAGCGTTTTGTTTGCAACGCATCGCTAAGAGTTCACTACTTGACGCACTCTAAAGTGAAGCCGTACCTGTGCAACGTCTGTGGCTGTAGTTTCACTCAGCGTTCGTCGATGATGTTACACTGGAAGAAAAAACACCCGGACGCTGGGGCGCCACCACCTCCGGTCACACTCACTAACTTCTTCGATGCAATGGACAACGAGGTGCAGAGGCTCGTCGAGCCCACAAGAGATGCAAACCCAGAAGCCGACACTGCGTCAGGACCGCTAGAGCAAAAACACGGACTGCTACAGAATGCAGTCGAGGTGAAGAGTCCCTTTAGAGGTGGTGACTTTGGAATCATCACGTTGGAACGACGATTCAGGAGAGGCCATTCGCACTGGACCCGCAAACAGAGTATCATCTCTCGAATACGCGTGCGATCTGCTTTGGAGCTTGTCTGCTCGAGTTCGACATCGACACCAGTCGAAGAAGACCCTCTTTACAAACCACCGTCTAAGACAATGCCCAAGCGCTCAATCAAGCCGACCTCCAAGAGAAAACGCGTAGTGCCGTCGAAGATCTCCAAGCAGAAAGATTCCGATTCTGATTTGGATAAAGAAGTAAGCACTAAAAAATCGACTGTTCCTGAAAAGACTACGAAACCGCACCTCAAAGCTACGGCGTCTGACAAAACTCCGAAAAACGAAGTTGTGTCCGATTCTGAAGCTTCTCTCGAGAAACCAAAAGAAACAAAGCAGGAAAAGCAGAATATCAAAAGCCTCTatcgcaaattaaaaaatggtaGTTTCGGCTGCAAGGTCTGCAACGAGAGGTTTACGCATCGCTTCAAGGTTTGCTCGCACATTCGAGCGAAACATCAACCACGAGAGATATTTCATTGCCCGGAGTGCCCGCAGAGTTACAAATCTAAGTACCAGCTTAGAACGCACATGATCATCCACCGTGAAAACAAAAACGACTTCATGTTCTTCTGCGACAAGTGCAACTATCGCGCATTAAGCAAGCACTATCTCAAGAATCACGAGATCAGAAAACATACTAATGTCTATCCGTTCGAATGCGACCACTGTAAAAAACGATTTAAGATAAAGATGGATCTCAAGTTTCATCTCGGAACGCACAGCGATTCCCAGCATATGTGCGATGTTTGCGGTAAGATGTATACCAGTCCAGAATCGTTATACAAGCACAGGCGGGTCATGCACCTCAACGAGTACAAGTTTAAGTGCCCAAAGTGCTTTCAGAAGCTGCTCAGTCAAGAGAGCTTGGACCATCATCTTGAATCGCACAAAGTCCTGCAC
- Protein Sequence
- KGHPRWSRKQSIISRVRQQSTTKFDKSTDPSTPAKNHLSKRQPSKSASNLSDKPKSKRKSSVPLKVIKKKKISDSDSDSDYEKSTKKAAKLKTEKSHLQTKTPNKTPKTKILVAQSKKAKEEAFKKKPKSLKAKKETSGKEVEHTNPEKPEKLDIEKLYFKSPSDGFICNVCNENFTHRFKVKLHIRSKHQPREVLKCLYCPQTYVSKYSLKTHMNMHQQTDSKYVYLCSKCDYRAMSKHSLNIHEIRKHSDDYQFECDHCKKRFKVKMDLKFHLGTHSDSQHMCDICGKMYTSAESLHKHRRMIHIVQRNFKCTKCWMKLQTQESLDHHLATHNITYKCDVCNEEFSKKYYMTRHKKRVHLVEKNKLCPVCGKRFVCNASLRVHYLTHSKVKPYLCNVCGCSFTQRSSMMLHWKKKHPDAGAPPPPVTLTNFFDAMDNEVQRLVEPTRDANPEADTASGPLEQKHGLLQNAVEVKSPFRGGDFGIITLERRFRRGHSHWTRKQSIISRIRVRSALELVCSSSTSTPVEEDPLYKPPSKTMPKRSIKPTSKRKRVVPSKISKQKDSDSDLDKEVSTKKSTVPEKTTKPHLKATASDKTPKNEVVSDSEASLEKPKETKQEKQNIKSLYRKLKNGSFGCKVCNERFTHRFKVCSHIRAKHQPREIFHCPECPQSYKSKYQLRTHMIIHRENKNDFMFFCDKCNYRALSKHYLKNHEIRKHTNVYPFECDHCKKRFKIKMDLKFHLGTHSDSQHMCDVCGKMYTSPESLYKHRRVMHLNEYKFKCPKCFQKLLSQESLDHHLESHKVLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -