Basic Information

Insect: Cecidostiba semifascia
Gene Symbol: Prdm15
Assembly: GCA_900474235.1
Location: UCQR01037369.1:2368-4750[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.3e-05 0.0013 19.6 3.2 1 23 308 330 308 330 0.99

2 12 1.5e-05 0.0015 19.4 2.7 1 23 334 356 334 356 0.98

3 12 0.00065 0.066 14.2 4.2 1 23 361 383 361 383 0.96

4 12 3.7e-05 0.0038 18.1 2.2 1 23 435 457 435 457 0.97

5 12 0.00084 0.085 13.9 1.3 1 23 462 484 462 484 0.97

6 12 0.00025 0.025 15.5 1.5 1 23 533 555 533 555 0.98

7 12 0.00044 0.044 14.8 1.8 2 23 563 584 563 584 0.97

8 12 1.1e-06 0.00011 22.9 2.1 1 23 595 617 595 617 0.96

9 12 0.00014 0.014 16.3 2.0 1 23 623 645 623 645 0.98

10 12 0.00018 0.018 16.0 0.7 1 23 651 673 651 673 0.98

11 12 5.5e-06 0.00055 20.8 2.0 1 23 679 701 679 701 0.96

12 12 9.7e-05 0.0098 16.8 0.3 1 22 707 728 707 728 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.3e-05	0.0013	19.6	3.2	1	23	308	330	308	330	0.99
2	12	1.5e-05	0.0015	19.4	2.7	1	23	334	356	334	356	0.98
3	12	0.00065	0.066	14.2	4.2	1	23	361	383	361	383	0.96
4	12	3.7e-05	0.0038	18.1	2.2	1	23	435	457	435	457	0.97
5	12	0.00084	0.085	13.9	1.3	1	23	462	484	462	484	0.97
6	12	0.00025	0.025	15.5	1.5	1	23	533	555	533	555	0.98
7	12	0.00044	0.044	14.8	1.8	2	23	563	584	563	584	0.97
8	12	1.1e-06	0.00011	22.9	2.1	1	23	595	617	595	617	0.96
9	12	0.00014	0.014	16.3	2.0	1	23	623	645	623	645	0.98
10	12	0.00018	0.018	16.0	0.7	1	23	651	673	651	673	0.98
11	12	5.5e-06	0.00055	20.8	2.0	1	23	679	701	679	701	0.96
12	12	9.7e-05	0.0098	16.8	0.3	1	22	707	728	707	728	0.96

Sequence Information

Coding Sequence: ATGGCAATAAACAATAGTTATTTCGTCATGCCAATGAATATGGACAGGGTCTGTCGCATCTGTTTGCAAGAGAATACAAATTTATCACCCATTTTTTGTAATGGACAAGAGATAGGTAGCAATCTCACGGATATATCCCAGAAAATACAAGTGTGCGGCGCTGTTGAGTGTCACGAGCAGGATGGCTTACCTGCTCTCATCTGtgatgtttgtatatataaggcaAGCGTTGCACACGAATTCAGACAATTATGTCAGCACTCGGATGCTCGATTAAggctttattataataagccTGCTAAATTTAATGCTACCGATTCCGGTACACAAACTGATCTAGAAGTTCAGGATCTTTTAACCAAAACAGCTGAGGAGATACAAAAcgattattttgtaaaacaaGAAGTAATGAATAATCAGCAGTTTCACAATGCAATACCGAATGAAGAGTACAATCCAGAACCTCAGACCAATACTGTTGTTACAACGATCGAGTCAGCCATGCCTACGGTCGACGTGAACATCTCAGTGGAGAGTGacaaactttttaattgtCATTTAGCCTTTGAAGAGCAGCCTAAAAATGCCGATAAAGCTCCAGAGATTGTTGCCTGTGATACCCAAACCGTGGAGTGTACACAAGAATTAATTCCAGTTTCTACAAACTTAATTGATAATGTTTGTACCATAGAGGCAGACATGAGTACTGCAGAAGAGAGTGATGTGAAAAACGATGTCAGCTATTTTACCTATATTACAAAGGAGGAGGAAGCCATCCAACAAGAGGACAacaatattgtacaaaaaCGTACTTCGGCGAGGAAGACCAAGTCTATACCAAGAACCGATTTGTATGAAGAAATGGAAGACGATAATTATTTTGAGCCAGTGAACGAGAATCGGAATTCGGAAGAAACGACATTCAAATGCGAGTCCTGCTCCAAACGATTCACCACTTTAAAAGGCTTGAAGAAACACCAATTAACCCACGAAAAACGGTATAAATGCGAAATTTGTGCAAAGACGTTTTGTAAGTTAGAGAACCTGGAGAAACACAAAAACATTCACACGACGAAGCCACACGCCTGTCAAATGTGTCACGCGAGTTTCTCGAAATCCCAGAGCCTCGTCAAGCACCTCAAGTCGCACACGGAGAAAGTCAACGACATCATTAAGCAGATTAACACGGACGAGCAGACGCCAGCAGACATAGAGCCGAAGACGAGCCCGAAGAGCGAAGAGTCGGACGACGACAGCGGCACCGTCAACGAGCCAGACGGATTCGAAAATGCTCCGGAAATTTTTAAGTGCGAGGAGTGCGGCCAGTACTGTTCAACGCTGAAAAATCTGAAACGACATGCCCTTATacacggagagagaaagtacTCCTGTACAGTGTGTAAAAAGTGGTTCTTCCGACCTGACACCCTGAAGAAGCATGCGGAGAGGCACGGCCACGGTTTGTTGGATAACTTGGCAGACGACAACAAGCTGTACGactccgacgacgacggttTCCCAGCTACGATGAACAACGGCACGGCGGAGACTGACAGTAACAAAAAGGACGAGAGCGAGGAAGAGGGCAACGGCGAGTACAAGTGTCAGCATTGTGATAAAATCATGGCTACAAAAAAGGGTCTACGTCGACACGTCGCCATGCACAAGCCCAAACCAGAACCCGCAGTCTGTGAGATTTGCAAGAAGGTATGTGCCAGCCGAGCTCGTCTCACCCTCCATCAGAAGACTCACAATAAGCCCAAGGAGAAGGTCCCCCGTGAATATCTCTGCCACATCTGCAGCAAGGTCTACCCGAGCAACTCCTCGCTGACCTATCACATGCGCACCCACACAGGAGTGAAACCCCACGTCTGCAAGACCTGCAACAGCGGCTTCACGACAACGACGAGCCTGGCGAATCACATGCGCATCCACACGGGCGACAAACCCTTCGTCTGCCACGTCTGCAGCGCGGCGTTTGCTGTGAGTTCGGCCTTCCGGAGGCACCTGACTCGACACACCGGCGAAGCCAATTACCTCTGCAAGACGTGCGGCAAAGCCTTTAAGCGGCTCAGTACCCTCAAGGAACACACTTACACGCATTCCGGCGAGAAGCCCTACGTCTGCAAGACCTGCGGCGCAGCCTATAGCCACAGCGGCAGCCTCTTCGCGCACCAGAAGCGCTGTCGCGCCCAGTTCACCGAGATGGTCGTCGAGGACCATCATCACTCCGTTGCACATCACATACATGTTAACAACGTCCAGTCAGCGGTGCGATCGCTTGCTGTGATAGGTCAAATGTTCTGA
Protein Sequence: MAINNSYFVMPMNMDRVCRICLQENTNLSPIFCNGQEIGSNLTDISQKIQVCGAVECHEQDGLPALICDVCIYKASVAHEFRQLCQHSDARLRLYYNKPAKFNATDSGTQTDLEVQDLLTKTAEEIQNDYFVKQEVMNNQQFHNAIPNEEYNPEPQTNTVVTTIESAMPTVDVNISVESDKLFNCHLAFEEQPKNADKAPEIVACDTQTVECTQELIPVSTNLIDNVCTIEADMSTAEESDVKNDVSYFTYITKEEEAIQQEDNNIVQKRTSARKTKSIPRTDLYEEMEDDNYFEPVNENRNSEETTFKCESCSKRFTTLKGLKKHQLTHEKRYKCEICAKTFCKLENLEKHKNIHTTKPHACQMCHASFSKSQSLVKHLKSHTEKVNDIIKQINTDEQTPADIEPKTSPKSEESDDDSGTVNEPDGFENAPEIFKCEECGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLADDNKLYDSDDDGFPATMNNGTAETDSNKKDESEEEGNGEYKCQHCDKIMATKKGLRRHVAMHKPKPEPAVCEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHMRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQFTEMVVEDHHHSVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01274733;
90% Identity: iTF_01036464;
80% Identity: -