Csem025306.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- ZNF711
- Assembly
- GCA_900474235.1
- Location
- UCQR01010121.1:13361-15541[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 1.1 10.3 3.0 1 23 248 271 248 271 0.97 2 14 3.9e-06 0.00039 21.2 4.4 2 23 301 322 300 322 0.97 3 14 1.8e-05 0.0019 19.1 3.3 1 23 328 350 328 350 0.96 4 14 1.1 1.2e+02 4.0 1.3 3 23 358 378 357 378 0.94 5 14 5.5e-05 0.0055 17.6 0.2 1 23 388 410 388 410 0.98 6 14 5.1e-06 0.00051 20.9 0.9 1 23 416 439 416 439 0.97 7 14 2.3e-06 0.00023 21.9 1.7 1 23 445 468 445 468 0.92 8 14 1.3e-05 0.0013 19.5 1.3 1 23 474 496 474 496 0.99 9 14 0.001 0.1 13.6 0.2 1 23 502 525 502 525 0.92 10 14 1.2e-05 0.0013 19.6 1.6 1 23 531 553 531 553 0.98 11 14 0.00015 0.015 16.3 2.4 1 23 559 581 559 581 0.97 12 14 1.8e-05 0.0018 19.1 0.1 1 23 587 610 587 610 0.96 13 14 2.2 2.2e+02 3.1 0.1 9 23 623 637 615 637 0.89 14 14 1.3e-07 1.3e-05 25.9 3.9 1 23 643 665 643 665 0.98
Sequence Information
- Coding Sequence
- ATGGAGCATTTTCATAGTAGGGGACAAGTAGATGTTATTAAAACATGGTTTAGCAATGAAGTCAACTACAAGTATCTTTTTATCTATGAAGACTGTTTCTCCAGATTTGTAGTTTTTAAAGCTATGCGTACAAACTCTATTCAAGAGACTGCAAGAACGTTATTCGATGTGATAACCATGATTGGTGCTCCACAAATCCTGCAAAGTCCAAAGGGAAGGGAATTTGCAAAAGAACTTATAGTAGAATTGAGATTAATTTGGGATCATCTTGCTATTCTACACGgtgaaacattaaaaataaaaaaaccaaGAAGAAACTTCAGAAAACTCATAGACACTTGGTTGACTGCAAATCCAACTAAGTCATGGCTGgatgcaataaaaattatccaGGCATGTGAGAACAGGACATTTCAGCACTTGGATGGTAAAGTTCCATTTGATCTATTATTTAGTTGCAGTCTTAAAGACCCTTTTTGTAACCAGTCAATAGATTTTCAAGCTGAAGAAGATTGGCTTGCTTTCAAGGCTAATAATTTCACTAGCAGCCAAGATTTAAACAATGTTTTCCAACAAAATGTTCACAGCAATCAAAACAGTAACCATAGTGCAATATcagttaaaaatgaatctcCAATTCGTCATTTTAATGCGGACGCTTCCTTTGGTGAATCAGAAGATAAAACTCTCAGTAGTAAAGTACAACCAACTGGCAATATTGAACATCCTCTTGAACTTAAGTATAGCTGCAATTTCTGTGCCAAAACCTTCCAAGTACAAAGTCTTCTCGATGAACATACAAAAAGTTGCCATAGTGAAGCATCTTTGACAATAGATAGCTTAATGGCACAGGCTATGactttaaaatcaaaacggAAATCTAATCCAGTCCCAACTTTGGAATGCAATCACTGCAAACGGAAATTCTTCTTTCCGAGCGACCTAAAACGCCACATGCGTTCACACACGAACGAGCGACCTTTCAGCTGCCATATTTGCGGGAAAACCTTTAAACAACTAGAACATGTAACTCAGCACACTGTGATCCACACGGACTATCGGTCGAATCACTGTGGACAATGCGACATGAAATTCGAGTCTCtggaaattttaaaactcCACAGTCAGAGTCACCAACAGCCGGTGGTTTCCCACAAGCTCTTTGAATGCGACGTTTGTAAGAAGGTTCTTACATCCAAATACGTCTTGGAACGTCATATTGCAAGTCACAGCCACGAGAGGCTGTTTCCTTGTAAGGAGTGTGGTAAGACATTCAAACTAGCTTGGCATGTTAAAAACCATATGCTGAGTGTGCATAGCGGAGAAAAGAAGTTTATTTGCACTatttgcaaaaagaaatttagtCGGGCCTATTCGCTGAGGAAGCACATCACATTTGCACATAATGGAGAGCAGCCCTATCAATGCGATTTTTGTGAAGCTAGATTTTCTCagaaaaagagcttgaatgGGCACATCAAGACCCATACAAATGAACAGCCTCATTCTTGTAAGATATGTGGCAAAAGCTATGCCCTGGCCGATATCTTACGTCGCCACATCTCAGCAGTGCATAAGCAGGGCCGCACTTACCAGTGCAAAATTTGCGCAAAGACGTTCAAGTCACCAGCTCATCTGTCTGGTCACAAAAAAGTGCACAAAGACGAGCGACCTTTTCAGTGTCGCCTCTGCCCTAAGAGTTTCAAGCACAAACTGGTCCTCAAGTCCCACATGGTCATTCACACCAATGTCCGACCCTTCGAGTGCGACATTTGTCAAGCCACGTTCGTGAGCAAGACGAGCCTGCAGATTCACATAAAAGGTGCGCACATGAACGAATCCTATGCGTGCAAAATTTGGGGTGATAAATTCAAACAGATTGGTCACCTTAATAAGCACGTTGTTGTGCACAACTCTCCAATGCCCCACCAGTGCAACGTTTGCGATAAGAAATACAACAGGTTGGATAATTTAAAGAAGCATATGAGGATGCACGAAAGGGATGGGGAGAAGAAAGAGGTCTGTTAA
- Protein Sequence
- MEHFHSRGQVDVIKTWFSNEVNYKYLFIYEDCFSRFVVFKAMRTNSIQETARTLFDVITMIGAPQILQSPKGREFAKELIVELRLIWDHLAILHGETLKIKKPRRNFRKLIDTWLTANPTKSWLDAIKIIQACENRTFQHLDGKVPFDLLFSCSLKDPFCNQSIDFQAEEDWLAFKANNFTSSQDLNNVFQQNVHSNQNSNHSAISVKNESPIRHFNADASFGESEDKTLSSKVQPTGNIEHPLELKYSCNFCAKTFQVQSLLDEHTKSCHSEASLTIDSLMAQAMTLKSKRKSNPVPTLECNHCKRKFFFPSDLKRHMRSHTNERPFSCHICGKTFKQLEHVTQHTVIHTDYRSNHCGQCDMKFESLEILKLHSQSHQQPVVSHKLFECDVCKKVLTSKYVLERHIASHSHERLFPCKECGKTFKLAWHVKNHMLSVHSGEKKFICTICKKKFSRAYSLRKHITFAHNGEQPYQCDFCEARFSQKKSLNGHIKTHTNEQPHSCKICGKSYALADILRRHISAVHKQGRTYQCKICAKTFKSPAHLSGHKKVHKDERPFQCRLCPKSFKHKLVLKSHMVIHTNVRPFECDICQATFVSKTSLQIHIKGAHMNESYACKIWGDKFKQIGHLNKHVVVHNSPMPHQCNVCDKKYNRLDNLKKHMRMHERDGEKKEVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -