Csem001047.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- retn_1
- Assembly
- GCA_900474235.1
- Location
- UCQR01084877.1:1-2791[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-19 2.2e-15 57.4 0.0 19 89 2 70 1 70 0.94 2 2 7.1 2.3e+04 -3.6 0.0 75 87 247 259 242 259 0.76
Sequence Information
- Coding Sequence
- AAACCGATCAACCGACTGCCGATAATGGCCAAGTCCGTGCTGGACCTGTACGAGCTGTACAACCTGGTGATAGCGCGAGGCGGCCTCGTCGACGTCATCAACAAGAAGCTCTGGCAGGAAATCATCAAGGGTCTTCACCTCCCGTCGAGCATAACCTCCGCCGCGTTCACGCTGCGCACCCAATACATGAAGTACCTCTACCCGTACGAGTGCGAGAAGAAGCACCTGTCGACTCCCGGCGAGCTGCAGGCGGCGATTGACGGCAATAGACGCGAGGGTCGACGCAGCAACTACGGCGCGTACGGGGGTGGCGGCGACGCCGGCCAACAGCAGCTCATGCACCAGCGTAGTCCGCACACGCCCTCGTCGCTGGCCTCGCTTCACCAGCAGATCTCGCCGCTCTCCCTCGTCACGGCAGCGGTCCAACAGGCCGCGGCAGCCAGCGGACAGCATCAGGTCGGCCCGCAGAACCCGGTCAACGGGAGCGCCGCCCACACGCCACTACTGCACCATCCACATCACCCGCAGCACGGACAGACGGGCCTGGGACAGACGCCCATCGCAGGAATGGCGCCGGAACTAGAGGCCCACATGGCCGAGTACGTGAAGCGGCTGCAGCACGAGATGAGGTCACGCCGAGGCACGGGCTCACCGAACCGGCTGATCCACCGACAGGGCAGCACGTCGCCACCGGCCAGGTCACCCTCGCGCGACGCCGCCTTCTTCGAGATGTCGCGCTTCACCCTCTGGAACATGTACAACAACAATCTGCACCCGAGCATCGGCTATCCGCCCTCGGCAGTCTCGCCCCAGAACAGCTCACACTCGCCACCACCGCAGCCAGCCAGCCCCGAGCCCCAGAAGGAGGCGCTCGACTTGGGCCTCAGGTCCTCGCCCAGCTCGTCCTCGCCAGCGCGACAGAGCCCGCCATCGTCCGGCGGCAGCATCGCCATTAAGCGCGAGCTCGAACTCACCAGCGGCACCTCGTCCAACAAGAGGCTATGCATGGACGAGGACAATCCCGCGGAGAGCACTGTTCCCGCTCTCCCCGGCACGCACATCAAGATCTCAAATCGAGGGGACGGTCGAGACAACTCGCTCGTCGTCAGCATGGAGCTCAACGGCGTCATGTACCAGGGCGTCTTGTTCGCGCAGACGGACGGCCGGGGCAGCCTCAGCGCCTCGACCAACAACAACGAGACCAAGGCCTCGACGCGCAACGTCGTCTCGTGA
- Protein Sequence
- KPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKHLSTPGELQAAIDGNRREGRRSNYGAYGGGGDAGQQQLMHQRSPHTPSSLASLHQQISPLSLVTAAVQQAAAASGQHQVGPQNPVNGSAAHTPLLHHPHHPQHGQTGLGQTPIAGMAPELEAHMAEYVKRLQHEMRSRRGTGSPNRLIHRQGSTSPPARSPSRDAAFFEMSRFTLWNMYNNNLHPSIGYPPSAVSPQNSSHSPPPQPASPEPQKEALDLGLRSSPSSSSPARQSPPSSGGSIAIKRELELTSGTSSNKRLCMDEDNPAESTVPALPGTHIKISNRGDGRDNSLVVSMELNGVMYQGVLFAQTDGRGSLSASTNNNETKASTRNVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00079598;
- 90% Identity
- iTF_01274262;
- 80% Identity
- -