Cfun007898.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01000231.1:36233-41209[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.07 5.9 7.6 0.8 1 23 156 179 156 179 0.96 2 13 1.1 91 3.9 3.4 2 20 183 200 183 202 0.81 3 13 0.0016 0.14 12.8 1.7 1 21 207 227 207 228 0.95 4 13 0.0017 0.15 12.7 2.5 1 21 237 257 237 258 0.94 5 13 0.37 31 5.4 2.1 1 23 267 290 267 290 0.96 6 13 0.00023 0.019 15.5 3.1 1 21 299 319 299 320 0.94 7 13 0.0042 0.36 11.5 0.9 1 20 478 497 478 499 0.95 8 13 0.00091 0.076 13.6 0.7 1 23 505 530 505 530 0.97 9 13 0.0098 0.83 10.3 1.3 2 20 548 566 547 568 0.93 10 13 0.14 12 6.7 1.2 1 23 581 604 581 604 0.91 11 13 0.031 2.6 8.7 0.3 1 21 613 633 613 634 0.94 12 13 0.0023 0.19 12.3 2.7 1 21 682 702 682 703 0.95 13 13 1.9e-05 0.0016 18.9 2.6 1 23 711 734 711 734 0.98
Sequence Information
- Coding Sequence
- aTGACTTACGTGAAAGAGGAAATAGAACTTTCTGCCGACGaactttattatatcgaaATTTCAGATAGTTCTGaaaatgaaGTCGCTTTGAGTACCAGCACTCTAACTACAGATGAAAATGATTTCAAAGTACTGCAAAAAGAAGTTCTAAACCAACCAAATTCATTAGAAATGCCAAAAATATCGGACCTTGCAAATAATTCCGAGAAAGAAGAAATGGAACCTAAAGTCGAGTTATATTGTCTGAGTTGCGaatcgatatttaaaaaatctgacGTAAATGAAAACAAGCAGAGTCAAATTTGTTCCAAGTGCCTTTCTATCCAATCTAAACACAAGAACTGCTCTAACGGAAAATTGATTGAACAGGGTGTAAATGACCAACCTCAGAATACAGAGTCTAGCCAAATCCAGCTTCATCAGTACGATTCGCGCGATTTTCAAGACATCGTGAAACGCGGCACCTTCAACTGTAACGACTGTCCCTTTTTCTCTATCATCAAGGCTAAATTGAAGTACCACATCATGAGTAAGCACATGTTCGAGTCCTGTCCAACCTGCAATTGTGTCTTTAATAGTGCTTCCTTCTATCATCACAAGAAAAATTGTGGAAATCGCTACAAATGTTCACAGTGCCTCTTCTCTTCCAAATATCCGTCTAACTTAAAACGTCACAAAAAAATTCCGAACGATAATactaaattgaatttcacaTGCCCTAAATgtggaaaagtatataaaacgattAAGTGCATGAGGTATCATTTGAATTACatgtgtaaaaagaaaaaaccgagTTACAGTTGCGATCTCTGCAGCTATAAGACAACTTTCAAAAGATACTTGCCAGATCACATGATGTACAAGCACTCAAGCCTGTATCCGGGCAAGTTATTTCCGTGTTGTCATTGTGGGAAGGTTTTTCGTAACAAGTATGATAGGATTAAGCATgccagaaataaaaagagttgcGGAAACTTGGTCAAGAACACGGAGGCAAATGAGGTTTCTGATGAAGATGTTATAATATTAGACAGTGATTCATCTGATGTTGTTGACAAGAAGCAAAATTCAAAGCAGCTACACGAGTTTGATACAGatATAGGCCGTATATCTGTGGAAGAAATTTACGTCAAAGAAGAGGTTCACGTAGGCTCGGATGATTTCACATACTTGGGCGCATCTCATAGTTACAAATCTGAGGACGAAGacatacaaattaaaattgaagatGTTAGAACGCTTCCTTCCACGCATTACGACGAACCATCAACTTcaacatataaaaattcaaaggtaGTCCTACCAAGAACATCAAGTTCAGCAGACTCTTCAGGCCGAATACTGTTGTTCTGTTTGCTTTGCGGTCGTAAATCGTCAAACTTCAAGAGCAGGAACAGAAACTGCAATAATTGCAAGACTCGTCTTCGTTACATGTGCAGCCTATGCGATAAGAACTACTCAACGCTTACCAGACTCCGATATCACATTTATTATGGTTGTAGTGGAGACTATCGTTGCACTTACCCAGGATGCGAATACGTAACTCATGACTGGTCTGAATTACGGGATCACCAACGACTTCAACACAACGTTCTCCCAGGCATACCTCCTACCCCTTCCTCACCCGAAGTCAATCTCCGATGTCCTCATTGTTCCAAATGGTTTAGACAAATGAGGTCTTTGCAGAAACACAAATTGCTGTGCAGTGGGGCGAAATGCAAGGCCCAAAGAAAATGTTATACGTGTTCAGTTTGTGACTGTTCAGCTCGGACGTATAAAGATATCAAACAACATGAAGAACTGGTGCATGGAATGGTTAAAAAGAGAGGATTCTATAACTGTCCGTATTGTTCTAAGAAGATTGTTAATGTGAAAAAGATGAGATCGCACATTAAAATTTGCAAGATTAAAGTGCATGAAAGTTTCAGTTTTCCAGATATCAACCTGGTACCAGTTGTTTGGCCCCAACAATCGAAGAACCTCGACCTTTTACATCAACCCCAACGTCAGCATCTCCAATCACAGGATCAAACGGAACGTTTTCCCTGTACCGACTGTCCCAGCGTTTTCAGCCGAAAGTGTAACCTTTATTATCACCGAAAATACGAGTGCGGTCAACCACCTCGATTCCAGTGTCCCTACTGTCAGTACCGAACTCGACATCAGTCTAACGTACGAGCTCATGTTAGAAGAATTCACGCTGGCAGAGAAGTGTACTTCATAGATTTGGGAAGGCAGGGATTTGACAACTTGTTTTAA
- Protein Sequence
- MTYVKEEIELSADELYYIEISDSSENEVALSTSTLTTDENDFKVLQKEVLNQPNSLEMPKISDLANNSEKEEMEPKVELYCLSCESIFKKSDVNENKQSQICSKCLSIQSKHKNCSNGKLIEQGVNDQPQNTESSQIQLHQYDSRDFQDIVKRGTFNCNDCPFFSIIKAKLKYHIMSKHMFESCPTCNCVFNSASFYHHKKNCGNRYKCSQCLFSSKYPSNLKRHKKIPNDNTKLNFTCPKCGKVYKTIKCMRYHLNYMCKKKKPSYSCDLCSYKTTFKRYLPDHMMYKHSSLYPGKLFPCCHCGKVFRNKYDRIKHARNKKSCGNLVKNTEANEVSDEDVIILDSDSSDVVDKKQNSKQLHEFDTDIGRISVEEIYVKEEVHVGSDDFTYLGASHSYKSEDEDIQIKIEDVRTLPSTHYDEPSTSTYKNSKVVLPRTSSSADSSGRILLFCLLCGRKSSNFKSRNRNCNNCKTRLRYMCSLCDKNYSTLTRLRYHIYYGCSGDYRCTYPGCEYVTHDWSELRDHQRLQHNVLPGIPPTPSSPEVNLRCPHCSKWFRQMRSLQKHKLLCSGAKCKAQRKCYTCSVCDCSARTYKDIKQHEELVHGMVKKRGFYNCPYCSKKIVNVKKMRSHIKICKIKVHESFSFPDINLVPVVWPQQSKNLDLLHQPQRQHLQSQDQTERFPCTDCPSVFSRKCNLYYHRKYECGQPPRFQCPYCQYRTRHQSNVRAHVRRIHAGREVYFIDLGRQGFDNLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -