Basic Information

Insect: Cecidostiba fungosa
Gene Symbol: Scrt1
Assembly: GCA_900474305.1
Location: UCOJ01000135.1:126454-130007[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.9e-06 0.00016 22.0 2.9 1 23 468 490 468 490 0.98

2 5 0.025 2.1 9.0 0.2 2 23 500 521 499 521 0.94

3 5 1.2e-06 0.0001 22.6 0.4 1 23 525 547 525 547 0.97

4 5 4e-08 3.4e-06 27.3 0.6 3 23 555 575 553 575 0.98

5 5 3.7e-06 0.00031 21.1 1.1 1 21 581 601 581 602 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.9e-06	0.00016	22.0	2.9	1	23	468	490	468	490	0.98
2	5	0.025	2.1	9.0	0.2	2	23	500	521	499	521	0.94
3	5	1.2e-06	0.0001	22.6	0.4	1	23	525	547	525	547	0.97
4	5	4e-08	3.4e-06	27.3	0.6	3	23	555	575	553	575	0.98
5	5	3.7e-06	0.00031	21.1	1.1	1	21	581	601	581	602	0.95

Sequence Information

Coding Sequence: ATGCCGCGCTGCTACATGGTGAAGAAGGCGCTGTGCAACAAGTACATCAACAGCGTCGCCAGAGGCTTCGACGGCTGGAGCACGAGGTGTCGCAgtccgacgccgccgccgccgccgaagCTCGCCGAGACGCAAAACAAGCTGCCGGCACCCAAGCCGCGCTACGCCTCGCCCGTTACCTCAGGTCACCATTTCTCATCGAAAAAGGATGACCAGACAACGCCGCTATCGAGTCTGCAGTCAAAGGACCACAGGCTACCGGTGATCGTGTCCACGTCGTCGCCGCtaagcagcagcggcgtcgAAACCgccaagacgacgacgacaaacaACTCGTCCTCGATCGACAGGGACGCCAAGACCGGTGCCGCCAAGATCATCAGCGTGTCGCCGGAGAGACCGCCCAGGTCGATCGAACAGCCTCTCGCCAAGTCCGCGTTCTCCCGGCCCAAGCAGTCGAAACGATCCCTCCACTGCTACGAGAACGAAACGCCGACGGATCACGCGGGAGTGCTCATACCCAGGCCTTGCATACCACCGAACAATGAGCTGCCGCTGTTCAGGGACAGGTCGGCAGCGGAAACGGAAGCGGCCCACGACCTCCTGGAGCTGTCGCGCTCGCTTCCGCCCCTGCCACCGCCGAGCGTCGCGATCGGTCCACAGAACGTGATCGAGCATCCGGCGAGCGACGTCCAGGAGATGACGGTCTACCAGCCGAGCGAGCAGCCGATCTATCAGGTCAACACGATCGACCTTACGGGTGCCGCCGCGCTCTATCATCCGCAGCCGCAACACCCGCACATCCATCAGACGAACGGACCACCCACTGGAATCATCTACGAGCCGGCCACTCTGCTGCACGCGCAGAGCCACGGGGGCGTCTTCATCCCACTGTCGCCAGTTCAGGAGATCCTCTTCTACAGTGCCCCGACGATTCCTGCGGCGATGATCGCCCAGCCGCTGCAGCCACAGCTGCACCATCCACCTCTGATTCAACAGCAGCCAACTCAACCTCAGGCTCAGCTTCAGCCGCAAATAATTCAACAGCAGGTTCAAGTTCAAGCGCAGCCGATGGTGATCGTCGAATCGTCTCCGCCTCTGACGCCACCGACGTCCGAGTGCAGCAGCGACGTGGAGAACAGCAACCCAAACTCGCAGCCGCCGAGTCAGCGCGACAAGGAGGTGCAGACGGTCGTGCAGGACCAAATCGAGGTCAAGGCGGCGAGCTACACCTACGACACGCTACTCGTCACCGACGGCAGGTCGAAGAATCGCAAAGCCCCGCAGCCCGCTCAACAGcaggcgcagcagcagcaacaacagcagcagcagcaacagcagcagaacaaACCGAGCGAGGCCGAGAGCATCGAACAGCCCGAGACCTCGAGGACCGGCAGATACGTCTGCTGCGAGTGTGGTAAGCAGTACGCGACCTCGTCGAATCTGTCGCGGCACAAGCAGACCCACCGGAGCATCGACTCGCAGTCGGCCAAGAAGTGCATCCACTGCGGCAAGGCCTACGTCAGTATGCCCGCCCTGGCGATGCACGTGCTCACCCACAAGCTGACCCACAGCTGCGGCGTCTGCGGCAAGATGTTCTCGCGGCCCTGGCTGCTCCAGGGACACCTGCGCAGTCACACCGGCGAGAAGCCCTACGGCTGCGCCCACTGCGGCAAGGCCTTCGCCGACCGCTCGAATCTCCGAGCCCACATGCAGACCCACTCGGCCGACAAGAACTACGAGTGCCCCAAGTGCCACAAGTCATTCGCCCTCAAGTCCTACCTGAACAAGCATCTCGAGTCGGCCTGCCAGCGCGAGAGCGCCGACGACTCCGGCAATGACCTCGACGCGCCCACCTAA
Protein Sequence: MPRCYMVKKALCNKYINSVARGFDGWSTRCRSPTPPPPPKLAETQNKLPAPKPRYASPVTSGHHFSSKKDDQTTPLSSLQSKDHRLPVIVSTSSPLSSSGVETAKTTTTNNSSSIDRDAKTGAAKIISVSPERPPRSIEQPLAKSAFSRPKQSKRSLHCYENETPTDHAGVLIPRPCIPPNNELPLFRDRSAAETEAAHDLLELSRSLPPLPPPSVAIGPQNVIEHPASDVQEMTVYQPSEQPIYQVNTIDLTGAAALYHPQPQHPHIHQTNGPPTGIIYEPATLLHAQSHGGVFIPLSPVQEILFYSAPTIPAAMIAQPLQPQLHHPPLIQQQPTQPQAQLQPQIIQQQVQVQAQPMVIVESSPPLTPPTSECSSDVENSNPNSQPPSQRDKEVQTVVQDQIEVKAASYTYDTLLVTDGRSKNRKAPQPAQQQAQQQQQQQQQQQQQNKPSEAESIEQPETSRTGRYVCCECGKQYATSSNLSRHKQTHRSIDSQSAKKCIHCGKAYVSMPALAMHVLTHKLTHSCGVCGKMFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNYECPKCHKSFALKSYLNKHLESACQRESADDSGNDLDAPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01274780;
90% Identity: iTF_01274780;
80% Identity: -