Cfun016793.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01000450.1:55827-59480[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.01 0.84 10.3 0.5 1 20 143 162 143 166 0.95 2 13 0.011 0.89 10.2 4.6 2 23 279 301 279 301 0.91 3 13 1.8e-05 0.0015 19.0 0.8 2 23 362 384 361 384 0.95 4 13 7.4 6.3e+02 1.3 7.4 3 23 460 481 459 481 0.86 5 13 0.023 2 9.1 0.2 1 23 532 555 532 555 0.95 6 13 0.00063 0.053 14.1 0.0 3 23 604 625 603 625 0.90 7 13 0.064 5.4 7.8 0.0 3 23 671 693 670 693 0.93 8 13 0.0085 0.72 10.5 3.7 2 23 741 763 740 763 0.96 9 13 0.029 2.5 8.8 2.7 3 23 778 799 776 799 0.94 10 13 1.6e-05 0.0014 19.1 0.2 2 23 844 866 844 866 0.94 11 13 9.8 8.3e+02 0.9 1.0 1 23 950 976 950 976 0.90 12 13 3.8e-06 0.00032 21.1 0.1 2 23 991 1013 990 1013 0.95 13 13 0.012 1 10.1 0.5 1 23 1090 1113 1090 1113 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCCAGCCAGGAGACAACGCCGCCGGCCACAGCTACATGCCTGCCAGCCGAGTCGACGACGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAACGGAGCGAGTCTCGGCGCCGACTGCTTGGCGATCTGGAGGCCGGCATCCCCAAGAAGCGCCGGAAGCAGTCGACCCCCATCAAGTTCTCCACCgccagcagcggcagcagcggcacctTGCTCACCCCGACATCCGGCGACGTGATCGCTGCTCCCGACAACGAGTCCGAAGACGAGGCCAGCAGTGATCGGCAACTGGATTACAGCGCGGAGGAAGGTAAGCAGCCCTCGAGCAACTCGCCGCACTCCAAGTCCATCCAGGGCCAGCATCAGCTGCTGCACCAGCATCAGCACACGAGCATCAAAGACGAGAACCTGAACAATGAATTCCGCTGCCAGTACTGTAGTCAATTTTTCGGTAGTCGCGGCGCGCTCGAGCTGCACCTCGAGTGCGAGCACAGCTTTAGTCAGCGGGAAACGCCGGCCTCGGCGAGCTCCAGTCCGGAGATGAGCAGTAGTAGCGCGCAGCCGATCAGTCCGATCAACCTGTCGGGGATTAGCATTAGGAACTTCGCGACGAGCAGCGCCTGGCTCTCGGGACAGAACCAGATGCAGCAGGAGGCTTCTctcgcggcgacggcggccaAGCTTCAGGCTGCCAGGAGCAATAATCATTTTCAGCCGCTGCCCGCTGGCTTTCCCTTCTTGTCCATGCCCGCTTTCCCCATGCCCGACTCTGCGCAGATTCAGCGCGCGGCCATGGGACAGTTTCCCAAGATATTCAATCCGGACGCCTACTGCGATCTGTGCAACAAGGAGTTCTGCAACAAGTATTTTCTCAAGACGCACAAGGCTAACAAGCACGGGATCTACGTCGATCCACCGAGCAGTCAGTCCCagcaggctgctgctgccgccgacgGGACAGCTTCGAATCCGTTCATCGGCACCGCCGCGAGTCCCATCGCAAGCGTGAGCCTCAAAGTCGTCGACCAGCAGAGACTCGAGAGCAACGGaatgcagctgctgcagcagccgagcaTCCCCTGCGACGTGTGCTCGAAGCGATTCAAGAGCGAGGATTCTCTGAGAAAGCACCGGCAGAAGATCCATCTCAACCAGAATAACGACGCCGTGGACTCGTCCCAGCTGCAGATGAGCGAGGAGGAGAGGCAGAGCCCCGGTGGCATGGAGGCTCTGTTCAAGCAGGAGTACAGCACAGACCAGGAGGGCTCGTCCTTCGCGACCATCTCGAGAGATCCAGGGCAGATCATCAAGGACTCGGCACTGAACGCCGACAGACTGAGACGCCTGGGTGTCATGAACCCCGAGGCCTTTTGCGAAATCTGCTGCAAGGAGTACTGCAACAAGTACTTCCTCCGAACGCACAAGCTCAAACGCCACGGCATCTTCATTCCCGAGAGCGACAAGTTGCCGAATCCTCCGGCAGGCGCCGCCACCTGGCACCAGGTTCAGGTTCAGACCAGTCCGTTGAATCTCATCATGGCAGACGCTCTGGGCAACGGATCCGAATCCATGGACAGAACCGAGGAGTACGCCTGCAGGACTTGCGGAATAAGGTTCCAGACCGAGGGGTTGTACCGCTTACACGTCGAGAAGATCCACGAGAACGGAGAGCAGTCGCCGCCCAGACCCGAGCATCAGCAGGACTCGATGGATCAACGCACCGATTCCATCTCTGAAGATCTTCAAAAGCTGCAGACGATGATCTTGCAACTCAATGGTTTGGAGTCGAACAAGGCGGCCTCTTGCGCCCTCTGCGGCAAGGACTACGACACTCCCAGTGCTCTCAGGAGCCACATGGTTGCCGAGCACGGTGTAGTCCCGGAAAACCTGACGGCAGCGCCacctcaacagcagcagcagcagcaacagcagcagcagccacagcagcagcaacagctcgcgagagagaaagcgtccCCCAGTGCCAGCGTCGCTCAGGTCTTGTGCAGCATCTGCGGCGACAGAGAGTACCCGAGCCAGGAGGCTCTGCGCAAACACATCGCAGAGGATCACCAGCCGTCAACGCCCACcagctcctcctcctcgacgCCTCAACTTCCAACCTCGGCGCCCACTACTCCCAACGCCCACAAGTCCAACCCATCCCAGCCGGAGACTCGCAAGCCCACGGCAAACATCACGCCCACCTCCAGCTACTGCGAGATCTGCAACAAGGAACTCTGCAACAAGTACTTCATGAAGACGCACATGCAGAAGATGCACGGCATCGAGATCGAGAATGGCGCCCAGATCGGTGGCGTCATCTGCAACATCTGCAAGAAGGAGCTCTGCAGCAAGTACTTTCTGCGCGTCCACAAGCAAAACACCCACGGCATCGTCGAAGAGGGCGCCACTGCGGGTAAGCAGGAGAGCTTCGAACCGCCCGCCAATCCGGAAGATCTAGCTCTGAAGCCCGAACAACTGGGAGACCTCAGTCTGCGCTACATCACCCACTTCACGGAGGTCTGTCCAATTTGCAACCGTCGATTCCGCAGCCCCAAGTGGTTGAAGGTTCACCTGCAGGGCGAGCACGGCAAGGCCGGAATAGACAAGTGGCGCGAGATCGAGCAATACCATCAGTCGCTGCCGAAGACTCCGTCCGCTCGGACTCCGGCTGCCTCCAAGAGctcgcaacagcagcagcctaacGCCAGCAGCATCAGGATACCCAACGGCTTCGAGCCCAACCAGCAGATCCGAGCTGATCTCGCAGCCCTGGGCAACCAGGTCCTCTCCAACTTCTTTGGAGGTAGCGCCACCGACGACCAGCAGGGCCAGACCTACCGCTGCTCACAGCTGCACTGCAACTTCCCCACCAATGTGCTGCCGCTGTTCTTCCTGCACGAGCGAACCCCCAGCCACCAAGAGAGCGCCTCGGCCATCGACAACGAGCGGATGCAGATCCAGTGTCCCATCTGCCCCCAGAGCTTCTCCCAGCCGGAGATGCTGCGCCAGCACATAGCCAGTCGACATTCGTTCCCAGGACTGCTCTCCCAGTTCCCCATCCCGCTGCTCAACGACTTCAGCCTCGGCAGCGAACAGCCGCAAGTCCATCAGCAGCTCGCCGACTGCGAGGCCAAAGAGGAGCTGCGCAGCCAGCCCAGTCCCCAGATCATGAACGAGATCGACACGAACAAGATGAGCAAGATCTTGAAGCCGGAGGACCAGAACCAGGCGGTTCAGGTGATGCCCCAAGGCGCCTACAAGTGCGCCCAGTGCGGCTTCGCCACGGCCAATCTGAACCGCATCAAGAAGCACATCCGCAAGGATCACAAGAGCCTCGGCGATCCAGCTGAGACTGCCCTAGCCGAGCTCAGCAAGACCCTCAAGGACGTGGCCAACAAGCACAAGGTCCCGGCCAGCTACGCGATGCCCCAGGACGTAAATCTCACGCCCGACAAGACCATCATGCAGCCCTTCATAATCGAGGAGCTCTGCAACGAGGCTCCTCCCCAGAACAACGGGAACAACGGCTGTGCCAACGACGACAACAATCCAAGGCGGTTCGCTCCCGCCCTCGTGTTCCTGCCGGTCAAGGCGAGGGTCAGCGGCAGCCTCACCATGTCCTTCACGCTCAATCCTGCCTGA
- Protein Sequence
- MSSSQETTPPATATCLPAESTTEIDSEGSSCEERSESRRRLLGDLEAGIPKKRRKQSTPIKFSTASSGSSGTLLTPTSGDVIAAPDNESEDEASSDRQLDYSAEEGKQPSSNSPHSKSIQGQHQLLHQHQHTSIKDENLNNEFRCQYCSQFFGSRGALELHLECEHSFSQRETPASASSSPEMSSSSAQPISPINLSGISIRNFATSSAWLSGQNQMQQEASLAATAAKLQAARSNNHFQPLPAGFPFLSMPAFPMPDSAQIQRAAMGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPSSQSQQAAAAADGTASNPFIGTAASPIASVSLKVVDQQRLESNGMQLLQQPSIPCDVCSKRFKSEDSLRKHRQKIHLNQNNDAVDSSQLQMSEEERQSPGGMEALFKQEYSTDQEGSSFATISRDPGQIIKDSALNADRLRRLGVMNPEAFCEICCKEYCNKYFLRTHKLKRHGIFIPESDKLPNPPAGAATWHQVQVQTSPLNLIMADALGNGSESMDRTEEYACRTCGIRFQTEGLYRLHVEKIHENGEQSPPRPEHQQDSMDQRTDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPSALRSHMVAEHGVVPENLTAAPPQQQQQQQQQQQPQQQQQLAREKASPSASVAQVLCSICGDREYPSQEALRKHIAEDHQPSTPTSSSSSTPQLPTSAPTTPNAHKSNPSQPETRKPTANITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEEGATAGKQESFEPPANPEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSPKWLKVHLQGEHGKAGIDKWREIEQYHQSLPKTPSARTPAASKSSQQQQPNASSIRIPNGFEPNQQIRADLAALGNQVLSNFFGGSATDDQQGQTYRCSQLHCNFPTNVLPLFFLHERTPSHQESASAIDNERMQIQCPICPQSFSQPEMLRQHIASRHSFPGLLSQFPIPLLNDFSLGSEQPQVHQQLADCEAKEELRSQPSPQIMNEIDTNKMSKILKPEDQNQAVQVMPQGAYKCAQCGFATANLNRIKKHIRKDHKSLGDPAETALAELSKTLKDVANKHKVPASYAMPQDVNLTPDKTIMQPFIIEELCNEAPPQNNGNNGCANDDNNPRRFAPALVFLPVKARVSGSLTMSFTLNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287528;
- 90% Identity
- -
- 80% Identity
- -