Cfun001642.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01000395.1:97618-100479[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.014 1.2 9.8 0.3 6 21 12 27 6 28 0.86 2 14 0.67 57 4.6 0.0 2 20 34 52 33 54 0.92 3 14 0.21 18 6.1 0.2 1 12 231 242 231 251 0.88 4 14 0.029 2.5 8.8 1.1 1 20 375 394 375 396 0.95 5 14 6.1e-05 0.0052 17.3 0.5 2 23 401 422 401 422 0.98 6 14 0.028 2.3 8.9 2.4 1 23 433 455 433 455 0.95 7 14 1.5 1.2e+02 3.5 0.0 1 23 474 495 474 495 0.86 8 14 0.00013 0.011 16.3 0.6 2 23 501 522 500 522 0.95 9 14 4.9e-05 0.0042 17.6 4.8 1 23 601 623 601 623 0.99 10 14 6e-06 0.00051 20.5 5.0 1 23 629 651 629 651 0.98 11 14 0.00013 0.011 16.2 4.6 1 23 657 679 657 679 0.98 12 14 1.5e-06 0.00013 22.4 0.8 1 23 685 707 685 707 0.98 13 14 9.4e-05 0.008 16.7 0.2 1 23 711 733 711 733 0.99 14 14 6.1e-05 0.0051 17.3 0.1 1 23 741 763 741 763 0.98
Sequence Information
- Coding Sequence
- ATGGGGTCCTTGAGCTTGATCTGTCCTATGTGCTGTGGTGAGACTTTCAACAACTCCGAGTCTCTAAAGTATCATCTGCTGAGCATTACGGACAATCTGTACTGTCCAGGATGTTCGATTAGGACTTACTCCATGGCTGCGTTGATACAGCATCTAGATAGTTGTGGGAAGGAAGAGGAGCAAGCcgagcaagagcagcagcaggggGATAAGGAAGTTACAACTGATCAAACTGAAAATAATGACAACGATAGGGAAGGAGCTGATATTTTGATACATGATGTGCATGACAACGATGAGGACACAATCAATGAGAGTTTCTTAGCTACAGTAAATGAGGAAGGAATAATGATTGTGGGTGAGGGTAGAACTATACAAGTTGACGAAAATGGTGATATTCAAGTTCTTGAGAAAGGGACTCCAATAAATAGtcaaaaattgattgaaaatacAGATGATGGTAGTACTATAGAATCAAATAAGAATAGAACTGTAGAGAAAAATTTGGAGAGAAATGATTCTACGATAAGTATGCCTAACACTTCTGAATTATTGAATGACAATGACAATGAATTCATGGAAGTAGTTGATGGTGATATGCAGTTTGAAGACTCTGAAATTCttggaataaaaaaggaaaatgagCAATCAACTGAAAAAGAGCAAGAAGATACAGAAGGTGAAGTAATGTACAGTTGTAGTACATGTGGTATGAGTTTTGCCTCTGTGTTAGAACACATCAAAGAATATCACGATGGACAAGAAGTTGTATTAGAAATGGCTGAACAACAGATTGATGAAATAgctgcaacaacaacagcacaGAATGTTACTGAATCTTCTGCCGATGCAAATACACCGGAGGCAACAACAAACAATgctacaaaaacaaatttatcttCAGCAAAACAAAGACAATCCATGAATACATTGAAGACTGAGGAATGTATAGACAGTGATGGTAGATTGTATACTAGAAAAGTTGTACAAATTGAGAGATTTTGGGACAGAACTCCAGTCACTCTCTCGACAACCAAAGCTCCCAtgattgaaaagtttttctctaATGTTGAAGGAGTCAAGgtAAGAGACAAAAGCGTAACGGTCGCTCCAACTCGAATGTACAGATGCAACCAATGCTTGGAGCAGTTCGCCAAGTTGAGTGATTTTCGCATTCACGTGTGCCTTCAGGGAACCAATCGTTGTGATCAGTGCGAACAGACATTCGCAACACCAAAAGCACTGCAAATACACAGGAAGTCACACGACTCGAACGATATTCCATCacaaaagctttttttgtgCACGGTCTGCGGAACCGAGTTCCTGACGCACAAGAGTCTGCGGCTGCATTCGCGAATGCACGCACCCGTGAGGGCGCGGCATGTCGACGCACCTGTGGGCACTGGGGAGGAAACTTTCGATTGCGATGAGTGTGGTGCAAAGTTGTCAGAGTCGTACAGAGCGGCGCACATGGCCTTACATGCCGGGGACCCGATAACTTGCCACGTCTGCAACCGCAAGTTTGATTCACAAGAAAGTTTAAACATGCATGCTGCAGTGCACTTAGAAATTCCTATGAATTCTAACAGTAATGTGGCAAATACTGCTGCTATAGCAATGGCAGCTGATAACGAGATGATCATTGACAGGACGGAAGATTCGACCGATCCCATATTTGTCAGCACTGGTATTACTCCTTCTGTGACTACACAGCTTAATACTACGGCGTCAACGGTGACGACAACGgcaacgacaacaacaacaaccgaTTCACCCGAGATGCAGAATCAAAAGCCTTATCAGTGCCAGCATTGTGGGCGTAGATTTACGAGACCTCACGAGAAAGTCAAGCATGAGAGAATACATACGGGAGAAAAACCACACTCCTGTGAGgTTTGTGGCAAAAAGTTCCGAGTTTCTTATTGTCTAACATTACACATGCGAACACACACGGGCGTTCGTCCCTACGAGTGCCAACACTGTGGCAAGCGATTCAAGGCCTCTTCTGTCTACAACCACCATCTCTTGACCCATGGTGAGGAGCGCGCCTACACCTGTCCTTACTGTCCAAAGACGTTTAAAACGCGAGTCCAGCTGGCTGGGCATAAGAATAGTCACACCAAGCCTTTCCGATGCACCGAGTGCTCTAGGCCATTTGCTTCGCTCTACGCTGCACGGGCTCATATCCAGACCCATAAACAAGACAACAACCTCAAGTTTAGTTGCAACATATGCGGAGCTTCGTACGGTCGTGCCTTTGCTTTGAAAGATCATATAAAACAGCACGAGATGGATAACACACTTGTGCCACCTGAAGCTACCCGGGAAGAGGAGGTACAGGAAGTTGACAGTTTTTTAATGCCGACCGTGGAAGATGCGGGAGATGTCGAAATCATTGTGCCATCGCCTCCCGATTGTAAGGATCCCATAGAGATTGAGTTAGTTGAATAG
- Protein Sequence
- MGSLSLICPMCCGETFNNSESLKYHLLSITDNLYCPGCSIRTYSMAALIQHLDSCGKEEEQAEQEQQQGDKEVTTDQTENNDNDREGADILIHDVHDNDEDTINESFLATVNEEGIMIVGEGRTIQVDENGDIQVLEKGTPINSQKLIENTDDGSTIESNKNRTVEKNLERNDSTISMPNTSELLNDNDNEFMEVVDGDMQFEDSEILGIKKENEQSTEKEQEDTEGEVMYSCSTCGMSFASVLEHIKEYHDGQEVVLEMAEQQIDEIAATTTAQNVTESSADANTPEATTNNATKTNLSSAKQRQSMNTLKTEECIDSDGRLYTRKVVQIERFWDRTPVTLSTTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLSDFRIHVCLQGTNRCDQCEQTFATPKALQIHRKSHDSNDIPSQKLFLCTVCGTEFLTHKSLRLHSRMHAPVRARHVDAPVGTGEETFDCDECGAKLSESYRAAHMALHAGDPITCHVCNRKFDSQESLNMHAAVHLEIPMNSNSNVANTAAIAMAADNEMIIDRTEDSTDPIFVSTGITPSVTTQLNTTASTVTTTATTTTTTDSPEMQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKQDNNLKFSCNICGASYGRAFALKDHIKQHEMDNTLVPPEATREEEVQEVDSFLMPTVEDAGDVEIIVPSPPDCKDPIEIELVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00144048;
- 90% Identity
- -
- 80% Identity
- -