Cfun002629.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01000178.1:795-4060[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00036 0.031 14.8 1.1 1 23 243 265 243 265 0.95 2 11 0.54 45 4.9 0.1 1 23 273 296 273 296 0.93 3 11 0.0025 0.21 12.2 3.6 1 23 343 365 343 365 0.98 4 11 0.00018 0.015 15.8 1.0 2 23 451 472 450 472 0.97 5 11 9.7e-07 8.1e-05 22.9 0.7 1 23 477 500 477 500 0.96 6 11 1.5e-05 0.0013 19.2 0.3 1 23 529 551 529 551 0.97 7 11 6e-07 5.1e-05 23.6 0.8 1 23 561 583 561 583 0.96 8 11 4.5e-06 0.00038 20.9 1.3 1 23 589 611 589 611 0.99 9 11 1.1e-05 0.00094 19.6 0.2 1 23 617 639 617 639 0.98 10 11 2.1e-05 0.0017 18.8 2.3 1 23 645 667 645 667 0.97 11 11 0.00043 0.037 14.6 0.3 1 21 673 693 673 694 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGGTCAACATCTACGAGACGAGCCGGAGGACTACTGATGTCACTGGCAATAATACACTGCTGGAGAACCAGGATGTAAGCGAAACCTGCCGGCTTTGCCTCGGGACATATACCTCGACCGATCAACGATGGGCTCTATTCGCTGGCGATTTGCCCCAAAAGCTCATGGCGTTCGCCGCTGTACAGatTCAAGAAAATGATGGTTTACCTCGAGTTATCTGCACAAATTGTCGCAATCTAGTTGACATGTCTTACAATTTCAAATGTCAAGTTGAAAAATGTGATCATGATCTTCGACATGCACTTCTTATGAGGCACTCAACAAATCATTGGCCTGAAACTATTACCACAATAGAGTCTATGCTACCATGTgctcaaaaaaatattagttctTGTATGGCAATCCAAACTGAAGAAAACAGTACAAATACCCATGAgcaatttatatttgaaataacaaATACATGTAACATAAACAGCAGTAACAATACATTTGAACCTAACATTATAGttgcaaaaaataacacaatatCTCAAGGAATAGATAATCTCTCATTGGAAAACCATAGAAGCGAAGAAATCCAAATCAATTTTGACGACCATTATTCAGTGAATGAACAAAGtgataagaataatttaattaacatagAATCTCAagcagtaaaagaaaatagtaatCAGAGTGATGATGAAAAACCTTTGATATTGCGAACAAAGCGTCATAAATGCAAGTATTGTATAAAATCGTTTGCCAATCTATCTTTGTTAGAAAAACATGCAGTCATTCACAAAAAGCAACCCAAAACAACATATACTTGTTACTTATGTgatgaacaatttttatcagTTGATAAAGTTGAAAGTCATATATTGTCCATTCACAATATAGACATGGGTAAAGTCAAAAGTATAGACTACAACAACaagacaggaaaaaaaagtcatgtTAACAATAGGAAAATATGTGATGATAGCAATAGCAATGAATCAAATTCATCGGAAGACAAGAAAGTTGGTCcgtttaattgtaaattttgtcCTAGACAGTTTGCCTATCACAAACCTTTTAAAGCTCATATTAAAACTCATAAAAATTGTGGTGATAAATTAGTGAAGTTAGTGAATGAATTAAGTGATATTCCAGAAACTATTTCACATATTGTTGACGAAGAAGGAAATTTCCAACGTTTAGAAAACAACTTACAAGAAAATTCTAATAACATTGAGGATTTTACTGATAAAAATAGTACAGATTTCTCTGACAATGAGGATAATCATTTTGATGAAGATGATAGCAGTGATGATAATGATCCAAATGATGACAATATACCTGAATCGAGTATACAATGCAATCAATGTGGTATACATGTTGCAACAATGAGAAACCTCAAAAGACATCTTTTAACTCACTCtggatttaaatataattgttcaATATGTGGTAAAGATTTCTCAAGGCCAGACAAACTTAGAGAACATCAACAATTAAAACATAAAGAAGAGCTATTTGATTCAGATGATGAATCTATGGATGATAATTCACCaaccagaagaaaaaaggACAAAAGTAATAGGCCTCACAAATGTTCAATATGTCCAAAGGCATTTGCTCAACCTCAATCACTAGCTAATCATGAAGAAAGGCACAGGCGCGCTCGAGATGAGCAGAAACGTTATTTGTGCGAAGTATGTAGTAAATGCTTTGCTCAGAGTGGTTCATTAGTGGCTCATATGCGCACGCACACAGGTGTGAAACCATATGTTTGCAATGTTTGTAGTAGAGGTTTTACTAAAAGTACCTATCTGCAATTGCATCTTAGAACACACAGTGGAGAAAAACCATACATTTGTCAGTATTGCAGCAGAGCTTTTGCTAGAGCAAATACTTTAGCTAGACACATAACTATGCATACAGGAGAAGCTAAATACCAATGTCAGATTTGCTCCAAGTCCTTTAGACGACTAACTTCTTTGAATGAACAtaattacacacatacaggaCAAAGACCTTATGCTTGTAAAATTTGTTCCAAAAGATATAACAATGCTGGATCATTGTACGCACACACAAAGAAGTGCAAAGTTACGCAAGCCAATACAGTACAGCAAAGTAACAACGAAACGCCTCCACAATCTGAAAGAGATGCTGCACCtcaacttttgatttttacagAGAAGAAGTTAGATGAAACTATAACTGACGAAATGATCGAAACTCAACCATCTTGTCAATTTATGATCGCAAATGTGCATGAACAAAAACCAATGACAGCTAATGTGCTTGAACCATTTACTATTCAAGAGTCACAGGTATATGACTTAAATTCAAAGCAATTTAAAACACCTTATTATGGATTGTATCCAAGTATGTGA
- Protein Sequence
- MEEVNIYETSRRTTDVTGNNTLLENQDVSETCRLCLGTYTSTDQRWALFAGDLPQKLMAFAAVQIQENDGLPRVICTNCRNLVDMSYNFKCQVEKCDHDLRHALLMRHSTNHWPETITTIESMLPCAQKNISSCMAIQTEENSTNTHEQFIFEITNTCNINSSNNTFEPNIIVAKNNTISQGIDNLSLENHRSEEIQINFDDHYSVNEQSDKNNLINIESQAVKENSNQSDDEKPLILRTKRHKCKYCIKSFANLSLLEKHAVIHKKQPKTTYTCYLCDEQFLSVDKVESHILSIHNIDMGKVKSIDYNNKTGKKSHVNNRKICDDSNSNESNSSEDKKVGPFNCKFCPRQFAYHKPFKAHIKTHKNCGDKLVKLVNELSDIPETISHIVDEEGNFQRLENNLQENSNNIEDFTDKNSTDFSDNEDNHFDEDDSSDDNDPNDDNIPESSIQCNQCGIHVATMRNLKRHLLTHSGFKYNCSICGKDFSRPDKLREHQQLKHKEELFDSDDESMDDNSPTRRKKDKSNRPHKCSICPKAFAQPQSLANHEERHRRARDEQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRGFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICSKSFRRLTSLNEHNYTHTGQRPYACKICSKRYNNAGSLYAHTKKCKVTQANTVQQSNNETPPQSERDAAPQLLIFTEKKLDETITDEMIETQPSCQFMIANVHEQKPMTANVLEPFTIQESQVYDLNSKQFKTPYYGLYPSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287490;
- 90% Identity
- -
- 80% Identity
- -